Evidence map›Paper›PMID 30940073›Full record

ArticleBMC plant biology2019

Temporal and spatial detection of Candidatus Liberibacter asiaticus putative effector transcripts during interaction with Huanglongbing-susceptible, -tolerant, and -resistant citrus hosts.

Qingchun Shi, Marco Pitino, Shujian Zhang, Joseph Krystel, Liliana M Cano, Robert G Shatters, David G Hall, Ed Stover

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
8.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 41 citations in OpenAlex.

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  16. "Applied and environmental microbiology · 2021
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  18. 'International journal of molecular sciences · 2020
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  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Qingchun ShiU.S. Horticultural Research Laboratory, Agricultural Research Service, United States Department of Agriculture, Fort Pierce, FL, USA.ORCID http://orcid.org/0000-0002-0333-9451
Marco PitinoInstitute of Food and Agricultural Sciences, Department of Plant Pathology, Indian River Research and Education Center, University of Florida, Fort Pierce, FL, USA.
Shujian ZhangU.S. Horticultural Research Laboratory, Agricultural Research Service, United States Department of Agriculture, Fort Pierce, FL, USA.
Joseph KrystelU.S. Horticultural Research Laboratory, Agricultural Research Service, United States Department of Agriculture, Fort Pierce, FL, USA.
Liliana M CanoInstitute of Food and Agricultural Sciences, Department of Plant Pathology, Indian River Research and Education Center, University of Florida, Fort Pierce, FL, USA.
Robert G ShattersU.S. Horticultural Research Laboratory, Agricultural Research Service, United States Department of Agriculture, Fort Pierce, FL, USA.
David G HallU.S. Horticultural Research Laboratory, Agricultural Research Service, United States Department of Agriculture, Fort Pierce, FL, USA.
Ed StoverU.S. Horticultural Research Laboratory, Agricultural Research Service, United States Department of Agriculture, Fort Pierce, FL, USA. ed.stover@ars.usda.gov.
Agricultural Research Service · USUniversity of Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCitrus Huanglongbing (HLB) is a bacterial disease with high economic significance. The associated agent Candidatus Liberibacter asiaticus is a fastidious, phloem-limited, intracellular bacterium that is transmitted by an insect vector the Asian citrus psyllid (ACP). The genome of Ca. L. asiaticus contains protein secretion machinery that suggests host cell modulation capacity of this bacterium.

resultsA total of 28 candidate effectors, an important class of secreted proteins, were predicted from the Ca. L. asiaticus genome. Sequence specific primers were designed for reverse transcription (RT) and quantitative PCR (qPCR), and expression was validated for 20 of the effector candidates in infected citrus with multiple genetic background. Using detached leaf inoculation, the mRNA of effectors was detected from 6 h to 7 days post ACP exposure. It was observed that higher bacterial titers were associated with a larger number of effectors showing amplification across all samples. The effectors' expression were compared in citrus hosts with various levels of HLB tolerance, including susceptible Duncan grapefruit and Washington navel orange, tolerant citron and Cleopatra mandarin, and resistant Pomeroy trifoliate and Carrizo citrange. Across all genotypes relatively high expression was observed for CLIBASIA_03695, CLIBASIA_00460, CLIBASIA_00420, CLIBASIA_04580, CLIBASIA_05320, CLIBASIA_04425, CLIBASIA_00525 and CLIBASIA_05315 in either a host-specific or -nonspecific manners. The two genotypes in each HLB-response group also show effector-expression profiles that seem to be different. In a companion study, the expression of effectors was compared between leaves and roots of own-rooted citrus that had been Ca. L. asiaticus-infected for more than a year. Results indicated relatively high expression of CLIBASIA_03875, CLIBASIA_04800 and CLIBASIA_05640 in all leaf and some root tissues of citron, Duncan and Cleopatra.

conclusionThis temporal and spatial expression analysis of Ca. L. asiaticus effectors identified candidates possibly critical for early bacterial colonization, host tolerance suppression and long-term survival which are all worthy of further investigation.

Indexed as

Host-Pathogen InteractionsAnimalsBacterial ProteinsCitrusDisease ResistanceGenome, BacterialGenotypeHemipteraInsect VectorsPhloemPlant DiseasesPlant LeavesRhizobiaceaeRNA, BacterialRNA, MessengerBacterial ProteinsRNA, BacterialRNA, Messenger

Identifiers

PMID30940073
PMCPMC6444692
OpenAlexW2937505041

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.