ArticlePloS one2019
Illustrating phylogenetic placement of fossils using RoguePlots: An example from ichneumonid parasitoid wasps (Hymenoptera, Ichneumonidae) and an extensive morphological matrix.
Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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15 citing papers in PubMed.
- Trimerous magnoliid flowers with a unique set of floral and pollen traits from the Late Cretaceous of Southern Bohemia (Czech Republic).The New phytologist · 2026Article
- Extroparvum occidentale gen. et sp. nov. and the Cretaceous diversification of Lauraceae.American journal of botany · 2026Article
- Re-evaluating the phylogenetic relationships of zosterophylls with a comprehensively sampled dataset and a combination of traditional and new alternative methods.Annals of botany · 2026Article
- Total-evidence phylogeny reveals recent crown group radiation and biogeographical history of hamsters.BMC biology · 2026Article
- PlaceMyFossils: An Integrative Approach to Analyze and Visualize the Phylogenetic Placement of Fossils Using Backbone Trees.Systematic biology · 2025Article
- Fossils indicate marine dispersal in osteoglossid fishes, a classic example of continental vicariance.Proceedings. Biological sciences · 2024Article
- Bayesian Total-Evidence Dating Revisits Sloth Phylogeny and Biogeography: A Cautionary Tale on Morphological Clock Analyses.Systematic biology · 2024Article
- ZooKeys · 2024Article
- Reconciling fossils with phylogenies reveals the origin and macroevolutionary processes explaining the global cycad biodiversity.The New phytologist · 2023Article
- An eosimiid primate of South Asian affinities in the Paleogene of Western Amazonia and the origin of New World monkeys.Proceedings of the National Academy of Sciences of the United States of America · 2023Article
- Impact of increasing morphological information by micro-CT scanning on the phylogenetic placement of Darwin wasps (Hymenoptera, Ichneumonidae) in amber.Swiss journal of palaeontology · 2023Article
- Using Information Theory to Detect Rogue Taxa and Improve Consensus Trees.Systematic biology · 2022Article
- Article
- New opabiniid diversifies the weirdest wonders of the euarthropod stem group.Proceedings. Biological sciences · 2022Article
- Mind the Outgroup and Bare Branches in Total-Evidence Dating: a Case Study of Pimpliform Darwin Wasps (Hymenoptera, Ichneumonidae).Systematic biology · 2021Article
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2 authors.
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Abstract
The fossil record constitutes the primary source of information about the evolutionary history of extant and extinct groups, and many analyses of macroevolution rely on fossils that are accurately placed within phylogenies. To avoid misinterpretation of the fossil record, especially by non-palaeontologists, the proper assessment and communication of uncertainty in fossil placement is crucial. We here use Bayesian morphological phylogenetics to evaluate the classifications of fossil parasitoid wasps (Hymenoptera, Ichneumonidae) and introduce 'RoguePlots' to illustrate placement uncertainty on the phylogeny of extant taxa. Based on an extensive, newly constructed morphological matrix of 222 characters in 24 fossil and 103 extant taxa, we test three different aspects of models of morphological evolution. We find that a model that includes ordered characters, among-character rate variation, and a state-space restricted to observed states achieves the highest marginal likelihoods. The individual RoguePlots reveal large differences in confidence in the placement of the different fossils and allow some refinements to their classification: Polyhelictes bipolarus and Ichninsum appendicrassum are moved from an uncertain subfamily placement to Pimplinae, Plectiscidea lanhami is transferred to Allomacrus in Cylloceriinae (Allomacrus lanhami, comb. nov.), Lithotorus cressoni is moved from Diplazontinae to Orthocentrinae, and we note uncertainty in the generic placements of Rhyssella? vera and Xanthopimpla? messelensis. We discuss potential artefacts that might result in biased posterior probabilities in Bayesian morphological phylogenetic analyses, pertaining to character and taxon sampling, fossilization biases, and model misspecification. Finally, we suggest future directions both in ichneumonid palaeontology and in the way RoguePlots can improve both assessment and representation of placement uncertainty, both in fossils and other rogue taxa.
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