Evidence map›Paper›PMID 30937450›Full record

ArticleNucleic acids research2019

Global translation inhibition yields condition-dependent de-repression of ribosome biogenesis mRNAs.

Ze Cheng, Gloria Ann Brar

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. Detection and Characterization of the Eukaryotic Vacant Ribosome.International journal of molecular sciences · 2025
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Ze ChengDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.
Gloria Ann BrarDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.
University of California, Berkeley · US

Funding

Dissecting the roles of pervasive short ORFs in meiosisDP2GM119138 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BRAR, GLORIA ANN · 2015 to 2015
$2.4M
NIGMS NIH HHS DP2 GM119138
6 · The paper itself

Abstract

Ribosome biogenesis (RiBi) is an extremely energy intensive process that is critical for gene expression. It is thus highly regulated, including through the tightly coordinated expression of over 200 RiBi genes by positive and negative transcriptional regulators. We investigated RiBi regulation as cells initiated meiosis in budding yeast and noted early transcriptional activation of RiBi genes, followed by their apparent translational repression 1 hour (h) after stimulation to enter meiosis. Surprisingly, in the representative genes examined, measured translational repression depended on their promoters rather than mRNA regions. Further investigation revealed that the signature of this regulation in our data depended on pre-treating cells with the translation inhibitor, cycloheximide (CHX). This treatment, at 1 h in meiosis, but not earlier, rapidly resulted in accumulation of RiBi mRNAs that were not translated. This effect was also seen in with CHX pre-treatment of cells grown in media lacking amino acids. For NSR1, this effect depended on the -150 to -101 region of the promoter, as well as the RiBi transcriptional repressors Dot6 and Tod6. Condition-specific RiBi mRNA accumulation was also seen with translation inhibitors that are dissimilar from CHX, suggesting that this phenomenon might represent a feedback response to global translation inhibition.

Indexed as

CycloheximideFeedback, PhysiologicalGene Expression Regulation, FungalMacrolidesPiperidonesPromoter Regions, GeneticProtein BiosynthesisProtein Synthesis InhibitorsRepressor ProteinsRibosomesRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCycloheximideDot6 protein, S cerevisiaelactimidomycinMacrolidesPiperidonesProtein Synthesis InhibitorsRepressor ProteinsRNA, MessengerSaccharomyces cerevisiae ProteinsTod6 protein, S cerevisiae

Identifiers

PMID30937450
PMCPMC6547411
OpenAlexW2930003603

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.