ArticleApplications in plant sciences2019
Integrating herbarium specimen observations into global phenology data systems.
Article in Applications in plant sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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14 citing papers in PubMed, 36 citations in OpenAlex.
- Bridging data silos to holistically model plant macrophenology.The New phytologist · 2026Review
- Changes in temperature and precipitation drive shifts in mean flowering timing of tropical plants from 1960 to 2021 across seven locations.Biology open · 2026Article
- Observing shifts in phenology of tropical flowering plants.PloS one · 2026Article
- Definition of reproductive structures in Eucalyptus for phenological data collection.International journal of biometeorology · 2025Review
- Can Artificial Intelligence Help in the Study of Vegetative Growth Patterns from Herbarium Collections? An Evaluation of the Tropical Flora of the French Guiana Forest.Plants (Basel, Switzerland) · 2022Article
- Using Convolutional Neural Networks to Efficiently Extract Immense Phenological Data From Community Science Images.Frontiers in plant science · 2021Article
- Transforming the study of organisms: Phenomic data models and knowledge bases.PLoS computational biology · 2020Review
- Small herbaria contribute unique biogeographic records to county, locality, and temporal scales.American journal of botany · 2020Article
- Machine Learning Using Digitized Herbarium Specimens to Advance Phenological Research.Bioscience · 2020Article
- Methods for broad-scale plant phenology assessments using citizen scientists' photographs.Applications in plant sciences · 2020Article
- Testing Hopkins' Bioclimatic Law with PhenoCam data.Applications in plant sciences · 2019Article
- Toward a large-scale and deep phenological stage annotation of herbarium specimens: Case studies from temperate, tropical, and equatorial floras.Applications in plant sciences · 2019Article
- Integrating herbarium specimen observations into global phenology data systems.Applications in plant sciences · 2019Article
- Patterns and biases in an Arctic herbarium specimen collection: Implications for phenological research.Applications in plant sciences · 2019Article
Corrections and comments
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Authors and funding
5 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
premise of the studyThe Plant Phenology Ontology (PPO) was originally developed to integrate phenology observations of whole plants across different global observation networks. Here we describe a new release of the PPO and associated data pipelines that supports integration of phenology observations from herbarium specimens, which provide historical and modern phenology data. METHODS AND
resultsCritical changes to the PPO include key terms that describe how measurements from parts of plants, which are captured in most imaged herbarium specimens, relate to whole plants. We provide proof of concept for ingesting annotations from imaged herbarium sheets of
conclusionsThese conceptual and technical advances will support the addition of phenology data from herbaria, but also could be expanded upon to facilitate the inclusion of data from photograph-based citizen science platforms. With the incorporation of herbarium phenology data, new historical baseline data will strengthen the capability to monitor, model, and forecast plant phenology changes.
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