Evidence map›Paper›PMID 30936303›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Ephemeral states in protein folding under force captured with a magnetic tweezers design.

Rafael Tapia-Rojo, Edward C Eckels, Julio M Fernández

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Force-regulated chaperone activity of BiP/ERdj3 is opposite to their homologs DnaK/DnaJ.Protein science : a publication of the Protein Society · 2024
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. An accurate probabilistic step finder for time-series analysis.bioRxiv : the preprint server for biology · 2023
    Article
  13. Allosteric activation of vinculin by talin.Nature communications · 2023
    Article
  14. Review
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Force spectroscopy with electromagnetic tweezers.Journal of applied physics · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Rafael Tapia-RojoDepartment of Biological Sciences, Columbia University, New York, NY 10027 rafa.t.rojo@gmail.com jfernandez@columbia.edu.ORCID 0000-0002-9460-2859
Edward C EckelsDepartment of Biological Sciences, Columbia University, New York, NY 10027.ORCID 0000-0002-1230-1148
Julio M FernándezDepartment of Biological Sciences, Columbia University, New York, NY 10027 rafa.t.rojo@gmail.com jfernandez@columbia.edu.

Funding

Single Molecule Studies of Titin ElasticityR01HL061228 · NHLBI · MAYO CLINIC COLL OF MEDICINE, ROCHESTER · PI FERNANDEZ, JULIO M · 1999 to 2017
$7.4M
Nanomechanics of bacterial adhesionR01GM116122 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI FERNANDEZ, JULIO M · 2015 to 2018
$1.4M
Protein dynamics under forceR35GM129962 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI FERNANDEZ, JULIO M · 2019 to 2020
$727k
Molecular Regulation of Titin Elasticity by Post-Translational ModificationF30HL129662 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ECKELS, EDWARD CHARLES · 2016 to 2018
$142k
NHLBI NIH HHS F30 HL129662NHLBI NIH HHS R01 HL061228NIGMS NIH HHS R01 GM116122NIGMS NIH HHS R35 GM129962
6 · The paper itself

Abstract

Magnetic tape heads are ubiquitously used to read and record on magnetic tapes in technologies as diverse as old VHS tapes, modern hard-drive disks, or magnetic bands on credit cards. Their design highlights the ability to convert electric signals into fluctuations of the magnetic field at very high frequencies, which is essential for the high-density storage demanded nowadays. Here, we twist this conventional use of tape heads to implement one in a magnetic tweezers design, which offers the unique capability of changing the force with a bandwidth of ∼10 kHz. We calibrate our instrument by developing an analytical expression that predicts the magnetic force acting on a superparamagnetic bead based on the Karlqvist approximation of the magnetic field created by a tape head. This theory is validated by measuring the force dependence of protein L unfolding/folding step sizes and the folding properties of the R3 talin domain. We demonstrate the potential of our instrument by carrying out millisecond-long quenches to capture the formation of the ephemeral molten globule state in protein L, which has never been observed before. Our instrument provides the capability of interrogating individual molecules under fast-changing forces with a control and resolution below a fraction of a piconewton, opening a range of force spectroscopy protocols to study protein dynamics under force.

Indexed as

Magnetic FieldsSpectrum AnalysisEquipment DesignMechanical PhenomenaMicroscopy, Atomic ForceProtein FoldingProteinsProteinsdynamic force spectroscopymagnetic tape headmolten globule stateprotein foldingprotein mechanics

Identifiers

PMID30936303
PMCPMC6475431

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.