Evidence map›Paper›PMID 30934865›Full record

ArticleInternational journal of molecular sciences2019

Structural and Computational Characterization of Disease-Related Mutations Involved in Protein-Protein Interfaces.

Dàmaris Navío, Mireia Rosell, Josu Aguirre, Xavier de la Cruz, Juan Fernández-Recio

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. On the linkage of thermodynamics and pathogenicity.Current opinion in structural biology · 2023
    Review
  4. Article
  5. Article
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Dàmaris NavíoBarcelona Supercomputing Center (BSC), 08034 Barcelona, Spain. damarisnavio@gmail.com.ORCID 0000-0002-2948-9431
Mireia RosellBarcelona Supercomputing Center (BSC), 08034 Barcelona, Spain. mireia.rosell@bsc.es.
Josu AguirreVall d'Hebron Institute of Research (VHIR), Universitat Autònoma de Barcelona, 08035 Barcelona; Spain. josu.aguirre@vhir.org.
Xavier de la CruzVall d'Hebron Institute of Research (VHIR), Universitat Autònoma de Barcelona, 08035 Barcelona; Spain. xavier.delacruz@vhir.org.
Juan Fernández-RecioBarcelona Supercomputing Center (BSC), 08034 Barcelona, Spain. juan.fernandezrecio@icvv.es.
Barcelona Supercomputing Center · ESConsejo Superior de Investigaciones Científicas · ESInstitució Catalana de Recerca i Estudis Avançats · ESUniversitat Autònoma de Barcelona · ES

Funding

Consejo Superior de Investigaciones Científicas 201720I031Interreg PIREPREDMinisterio de Economía, Industria y Competitividad, Gobierno de España BIO2016-79930-RMinisterio de Economía, Industria y Competitividad, Gobierno de España SAF2016-80255-R
6 · The paper itself

Abstract

One of the known potential effects of disease-causing amino acid substitutions in proteins is to modulate protein-protein interactions (PPIs). To interpret such variants at the molecular level and to obtain useful information for prediction purposes, it is important to determine whether they are located at protein-protein interfaces, which are composed of two main regions, core and rim, with different evolutionary conservation and physicochemical properties. Here we have performed a structural, energetics and computational analysis of interactions between proteins hosting mutations related to diseases detected in newborn screening. Interface residues were classified as core or rim, showing that the core residues contribute the most to the binding free energy of the PPI. Disease-causing variants are more likely to occur at the interface core region rather than at the interface rim (

Indexed as

Amino Acid SequenceAmino Acid Substitutionbeta-GlobinsComputational BiologyDiseaseHumansInfant, NewbornInfant, Newborn, DiseasesMolecular Docking SimulationMutant ProteinsMutationNeonatal ScreeningProtein BindingProteinsProtein Subunitsbeta-GlobinsMutant ProteinsProteinsProtein Subunitscomputational dockinginterface predictionprotein-protein interactionssingle amino acid variantsstructural bioinformatics

Identifiers

PMID30934865
PMCPMC6479360
OpenAlexW2928260461

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.