ArticleInternational journal of environmental research and public health2019
Metagenomic Profiling of Microbial Pathogens in the Little Bighorn River, Montana.
Article in International journal of environmental research and public health, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed.
- Genetic Basis of Multiple Antibiotic Resistance of PathogenicInternational journal of molecular sciences · 2025Article
- Resistome profiling and bacterial community structure of semi-urban gutter ecosystems of India.Scientific reports · 2025Article
- Detection of parasites in food and water matrices by shotgun metagenomics: A narrative review.Food and waterborne parasitology · 2025Review
- Metagenomic analysis of human, animal, and environmental samples identifies potential emerging pathogens, profiles antibiotic resistance genes, and reveals horizontal gene transfer dynamics.Scientific reports · 2025Article
- Microbial Ecotoxicology-40 Years on.Life (Basel, Switzerland) · 2025Article
- NASTRA: accurate analysis of short tandem repeat markers by nanopore sequencing with repeat-structure-aware algorithm.Briefings in bioinformatics · 2024Article
- Metagenomic analysis of sewage for surveillance of bacterial pathogens: A release experiment to determine sensitivity.PloS one · 2024Article
- Metagenomic mapping of cyanobacteria and potential cyanotoxin producing taxa in large rivers of the United States.Scientific reports · 2023Article
- Aggregation-Based Bacterial Separation with Gram-Positive Selectivity by Using a Benzoxaborole-Modified Dendrimer.Molecules (Basel, Switzerland) · 2023Article
- Persistence of E. coli O157:H7 in urban recreational waters from Spring and Autumn: a comparison analysis.Environmental science and pollution research international · 2022Article
- Nanopore sequencing technology, bioinformatics and applications.Nature biotechnology · 2021Review
- Nanopore-Based Surveillance of Zoonotic Bacterial Pathogens in Farm-Dwelling Peridomestic Rodents.Pathogens (Basel, Switzerland) · 2021Article
- Evaluating the accuracy of Listeria monocytogenes assemblies from quasimetagenomic samples using long and short reads.BMC genomics · 2021Article
- Is Oxford Nanopore sequencing ready for analyzing complex microbiomes?FEMS microbiology ecology · 2021Article
- Freshwater monitoring by nanopore sequencing.eLife · 2021Article
- Our Relationship to Water and Experience of Water Insecurity among Apsáalooke (Crow Indian) People, Montana.International journal of environmental research and public health · 2021Article
- Identification of chironomid species as natural reservoirs of toxigenic Vibrio cholerae strains with pandemic potential.PLoS neglected tropical diseases · 2020Article
- Emerging priorities for microbial metagenome research.Bioresource technology reports · 2020Review
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study.Scientific reports · 2020Article
- Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function.GigaScience · 2020Article
Corrections and comments
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The Little Bighorn River is the primary source of water for water treatment plants serving the local Crow Agency population, and has special significance in the spiritual and ceremonial life of the Crow tribe. Unfortunately, the watershed suffers from impaired water quality, with high counts of fecal coliform bacteria routinely measured during run-off events. A metagenomic analysis was carried out to identify potential pathogens in the river water. The Oxford Nanopore MinION platform was used to sequence DNA in near real time to identify both uncultured and a coliform-enriched culture of microbes collected from a popular summer swimming area of the Little Bighorn River. Sequences were analyzed using CosmosID bioinformatics and, in agreement with previous studies, enterohemorrhagic and enteropathogenic
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