Evidence map›Paper›PMID 30931960›Full record

ArticleScientific reports2019

A decade of sustained selection pressure on two surface sites of the VP1 protein of Enterovirus A71 suggests that immune evasion may be an indirect driver for virulence.

Ryan Roberts, Pinn Tsin Isabel Yee, Shama Mujawar, Chandrajit Lahiri, Chit Laa Poh, Derek Gatherer

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Ryan RobertsDivision of Biomedical & Life Sciences, Faculty of Health & Medicine, Lancaster University, Lancaster, LA1 4YT, UK.
Pinn Tsin Isabel YeeCentre for Virus & Vaccine Research, School of Science & Technology, Sunway University, Bandar Sunway, Kuala Lumpur, Selangor, 47500, Malaysia.
Shama MujawarDepartment of Biological Sciences, Sunway University, Bandar Sunway, Kuala Lumpur, Selangor, 47500, Malaysia.
Chandrajit LahiriDepartment of Biological Sciences, Sunway University, Bandar Sunway, Kuala Lumpur, Selangor, 47500, Malaysia.ORCID http://orcid.org/0000-0002-9783-7741
Chit Laa PohCentre for Virus & Vaccine Research, School of Science & Technology, Sunway University, Bandar Sunway, Kuala Lumpur, Selangor, 47500, Malaysia.
Derek GathererDivision of Biomedical & Life Sciences, Faculty of Health & Medicine, Lancaster University, Lancaster, LA1 4YT, UK. d.gatherer@lancaster.ac.uk.ORCID http://orcid.org/0000-0002-7385-5734
Sunway University · MYLancaster University · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Enterovirus A71 (EV-A71) is an emerging pathogen in the Enterovirus A species group. EV-A71 causes hand, foot and mouth disease (HFMD), with virulent variants exhibiting polio-like acute flaccid paralysis and other central nervous system manifestations. We analysed all enterovirus A71 complete genomes with collection dates from 2008 to mid-2018. All sub-genotypes exhibit a strong molecular clock with omega (dN/dS) suggesting strong purifying selection. In sub-genotypes B5 and C4, positive selection can be detected at two surface sites on the VP1 protein, also detected in positive selection studies performed prior to 2008. Toggling of a limited repertoire of amino acids at these positively selected residues over the last decade suggests that EV-A71 may be undergoing a sustained frequency-dependent selection process for immune evasion, raising issues for vaccine development. These same sites have also been previously implicated in virus-host binding and strain-associated severity of HFMD, suggesting that immune evasion may be an indirect driver for virulence (154 words).

Indexed as

Immune EvasionVirulenceAmino Acid SequenceAntigens, ViralBinding SitesCapsid ProteinsEnterovirus A, HumanHand, Foot and Mouth DiseasePhylogenyAntigens, ViralCapsid Proteins

Identifiers

PMID30931960
PMCPMC6443798
OpenAlexW2926977280

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.