Evidence map›Paper›PMID 30929741›Full record

ArticleAmerican journal of human genetics2019

Truncating Mutations in UBAP1 Cause Hereditary Spastic Paraplegia.

Mohammad Ali Farazi Fard, Adriana P Rebelo, Elena Buglo, Hamid Nemati, Hassan Dastsooz, Ina Gehweiler, Selina Reich, Jennifer Reichbauer, Beatriz Quintáns, Andrés Ordóñez-Ugalde and 32 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 34 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 1 pooled it
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 1 synthesis or guideline pooled it, 60 citations in OpenAlex.

  1. Frontiers in neuroscience · 2019
    Pooled it
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  6. Cell biological insights into human STING variants.Cell structure and function · 2025
    Review
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  8. Review
  9. Article
  10. Article
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  13. Article
  14. Review
  15. TOPORS as a novel causal gene for Joubert syndrome.American journal of medical genetics. Part A · 2023
    Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Hereditary Spastic Paraplegia: An Update.International journal of molecular sciences · 2022
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

42 authors at 14 institutions in 8 countries.

Mohammad Ali Farazi FardPersian BayanGene Research and Training Center, Shiraz, Iran.
Adriana P RebeloJohn P. Hussman Institute for Human Genomics, Dr. John T. Macdonald Foundation Department of Human Genetics, University of Miami, Miami, FL 33136, USA.
Elena BugloJohn P. Hussman Institute for Human Genomics, Dr. John T. Macdonald Foundation Department of Human Genetics, University of Miami, Miami, FL 33136, USA.
Hamid NematiShiraz Neuroscience Research Center, Shiraz University of Medical Sciences, Shiraz, Iran.
Hassan DastsoozPersian BayanGene Research and Training Center, Shiraz, Iran; Italian Institute for Genomic Medicine, University of Turin, Turin 10126 Italy.
Ina GehweilerDepartment of Neurodegenerative Diseases, Hertie-Institute for Clinical Brain Research and Center of Neurology, University of Tübingen, Tübingen 72076, Germany; German Center for Neurodegenerative Diseases, Tübingen 72706, Germany.
Selina ReichDepartment of Neurodegenerative Diseases, Hertie-Institute for Clinical Brain Research and Center of Neurology, University of Tübingen, Tübingen 72076, Germany; German Center for Neurodegenerative Diseases, Tübingen 72706, Germany.
Jennifer ReichbauerDepartment of Neurodegenerative Diseases, Hertie-Institute for Clinical Brain Research and Center of Neurology, University of Tübingen, Tübingen 72076, Germany; German Center for Neurodegenerative Diseases, Tübingen 72706, Germany.
Beatriz QuintánsNeurogenetics Group Instituto de Investigación Sanitaria, Hospital Clínico de Santiago, Santiago de Compostela 15706, Spain.
Andrés Ordóñez-UgaldeNeurogenetics Group Instituto de Investigación Sanitaria, Hospital Clínico de Santiago, Santiago de Compostela 15706, Spain.
Andrea CorteseJohn P. Hussman Institute for Human Genomics, Dr. John T. Macdonald Foundation Department of Human Genetics, University of Miami, Miami, FL 33136, USA.
Steve CourelJohn P. Hussman Institute for Human Genomics, Dr. John T. Macdonald Foundation Department of Human Genetics, University of Miami, Miami, FL 33136, USA.
Lisa AbreuJohn P. Hussman Institute for Human Genomics, Dr. John T. Macdonald Foundation Department of Human Genetics, University of Miami, Miami, FL 33136, USA.
Eric PowellThe Genesis Project foundation Miami, FL 33136, USA.
Matt C DanziJohn P. Hussman Institute for Human Genomics, Dr. John T. Macdonald Foundation Department of Human Genetics, University of Miami, Miami, FL 33136, USA.
Nicole B MartuscelliDepartment of Biology University of Miami, Miami, FL 33136, USA.
Dana M Bis-BrewerJohn P. Hussman Institute for Human Genomics, Dr. John T. Macdonald Foundation Department of Human Genetics, University of Miami, Miami, FL 33136, USA.
Feifei TaoJohn P. Hussman Institute for Human Genomics, Dr. John T. Macdonald Foundation Department of Human Genetics, University of Miami, Miami, FL 33136, USA.
Fariba ZareiShiraz Neuroscience Research Center, Shiraz University of Medical Sciences, Shiraz, Iran.
Parham HabibzadehPersian BayanGene Research and Training Center, Shiraz, Iran; Student Research Committee, Shiraz University of Medical Sciences, Shiraz, Iran.
Majid YavarianPersian BayanGene Research and Training Center, Shiraz, Iran.
Farzaneh ModarresiCenter for Therapeutic Innovation and Department of Psychiatry and Behavioral Sciences, University of Miami, Miami, FL 33136 USA.
Mohammad SilawiPersian BayanGene Research and Training Center, Shiraz, Iran.
Zahra TabatabaeiPersian BayanGene Research and Training Center, Shiraz, Iran.
Masoume YousefiPersian BayanGene Research and Training Center, Shiraz, Iran.
Hamid Reza FarpourShiraz Neuroscience Research Center, Shiraz University of Medical Sciences, Shiraz, Iran.
Christoph KesslerDepartment of Neurodegenerative Diseases, Hertie-Institute for Clinical Brain Research and Center of Neurology, University of Tübingen, Tübingen 72076, Germany; German Center for Neurodegenerative Diseases, Tübingen 72706, Germany.
Elisabeth MangoldInstitute of Human Genetics University of Bonn, Bonn 53113, Germany.
Xenia KobelevaDepartment of Neurology, University of Bonn, Bonn 53113, Germany.
Ivailo TournevDepartment of Neurology, Medical University-Sofia, Sofia 1431, Bulgaria; Department of Cognitive Science and Psychology, New Bulgarian University, Sofia 1618, Bulgaria.
Teodora ChamovaDepartment of Neurology, Medical University-Sofia, Sofia 1431, Bulgaria.
Amelie J MuellerInstitute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen 72706, Germany; Centre for Rare Diseases, University of Tübingen, Tübingen 72706, Germany.
Tobias B HaackInstitute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen 72706, Germany; Centre for Rare Diseases, University of Tübingen, Tübingen 72706, Germany.
Mark TarnopolskyDepartment of Pediatrics, McMaster University, Hamilton, Ontario L8S 4L8, Canada.
Ziv Gan-OrDepartment of Human Genetics, McGill University, Montréal, Quebec H3A 0G4, Canada; Department of Neurology and Neurosurgery, Montreal Neurological Institute and Hospital, McGill University, Montreal, Quebec, Canada.
Guy A RouleauDepartment of Human Genetics, McGill University, Montréal, Quebec H3A 0G4, Canada; Department of Neurology and Neurosurgery, Montreal Neurological Institute and Hospital, McGill University, Montreal, Quebec, Canada.
Matthis SynofzikDepartment of Neurodegenerative Diseases, Hertie-Institute for Clinical Brain Research and Center of Neurology, University of Tübingen, Tübingen 72076, Germany; German Center for Neurodegenerative Diseases, Tübingen 72706, Germany.
María-Jesús SobridoNeurogenetics Group Instituto de Investigación Sanitaria, Hospital Clínico de Santiago, Santiago de Compostela 15706, Spain.
Albena JordanovaMolecular Neurogenomics Group, VIB-UAntwerp Center for Molecular Neurology, University of Antwerp, Antwerpen 2610, Belgium; Molecular Medicine Center Department of Medical Chemistry and Biochemistry, Medical University-Sofia, Sofia 1431, Bulgaria.
Rebecca SchüleDepartment of Neurodegenerative Diseases, Hertie-Institute for Clinical Brain Research and Center of Neurology, University of Tübingen, Tübingen 72076, Germany; German Center for Neurodegenerative Diseases, Tübingen 72706, Germany.
Stephan ZuchnerJohn P. Hussman Institute for Human Genomics, Dr. John T. Macdonald Foundation Department of Human Genetics, University of Miami, Miami, FL 33136, USA.
Mohammad Ali FaghihiPersian BayanGene Research and Training Center, Shiraz, Iran; Center for Therapeutic Innovation and Department of Psychiatry and Behavioral Sciences, University of Miami, Miami, FL 33136 USA. Electronic address: mfaghihi@med.miami.edu.
University of Miami · USShiraz University of Medical Sciences · IRHertie Institute for Clinical Brain Research · DEInstituto de Investigación Sanitaria de Santiago · ESUniversity of Tübingen · DEDr. John T. Macdonald Foundation · USGerman Center for Neurodegenerative Diseases · DEMedical University of Sofia · BGUniversity of Bonn · DEMcGill University · CAMcMaster University · CAMontreal Neurological Institute and Hospital · CANew Bulgarian University · BGUniversity of Turin · IT

Funding

GENOME STUDIES IN HEREDITARY SPASTIC PARAPLEGIA - beyond the exomeR01NS072248 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Stephan Zuchner · 2011 to 2026
$9.2M
NINDS NIH HHS R01 NS072248
6 · The paper itself

Abstract

The diagnostic gap for rare neurodegenerative diseases is still considerable, despite continuous advances in gene identification. Many novel Mendelian genes have only been identified in a few families worldwide. Here we report the identification of an autosomal-dominant gene for hereditary spastic paraplegia (HSP) in 10 families that are of diverse geographic origin and whose affected members all carry unique truncating changes in a circumscript region of UBAP1 (ubiquitin-associated protein 1). HSP is a neurodegenerative disease characterized by progressive lower-limb spasticity and weakness, as well as frequent bladder dysfunction. At least 40% of affected persons are currently undiagnosed after exome sequencing. We identified pathological truncating variants in UBAP1 in affected persons from Iran, USA, Germany, Canada, Spain, and Bulgarian Roma. The genetic support ranges from linkage in the largest family (LOD = 8.3) to three confirmed de novo mutations. We show that mRNA in the fibroblasts of affected individuals escapes nonsense-mediated decay and thus leads to the expression of truncated proteins; in addition, concentrations of the full-length protein are reduced in comparison to those in controls. This suggests either a dominant-negative effect or haploinsufficiency. UBAP1 links endosomal trafficking to the ubiquitination machinery pathways that have been previously implicated in HSPs, and UBAP1 provides a bridge toward a more unified pathophysiology.

Indexed as

MutationAdolescentAdultAgedAged, 80 and overAnimalsCarrier ProteinsChildChild, PreschoolDatabases, FactualDisease Models, AnimalEndosomesFamily HealthFemaleFibroblastsGenes, DominantCarrier ProteinsProtein IsoformsUBAP1 protein, humananimal modelendosomal traffickinggenetic diseaseshereditary spastic paraplegianeurodegenerative diseasesspasticityubiquitinationzebrafish

Identifiers

PMID30929741
PMCPMC6451742
OpenAlexW2934716016

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.