Evidence map›Paper›PMID 30926878›Full record

ArticleNature communications2019

The anti-cancer drugs curaxins target spatial genome organization.

Omar L Kantidze, Artem V Luzhin, Ekaterina V Nizovtseva, Alfiya Safina, Maria E Valieva, Arkadiy K Golov, Artem K Velichko, Alexander V Lyubitelev, Alexey V Feofanov, Katerina V Gurova and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed.

  1. Review
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  11. Rewiring cancer: 3D genome determinants of cancer hallmarks.Current opinion in genetics & development · 2025
    Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. A nucleosome switch primes Hepatitis B Virus infection.bioRxiv : the preprint server for biology · 2024
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Omar L KantidzeInstitute of Gene Biology RAS, 34/5 Vavilov Str., 119334, Moscow, Russia.ORCID http://orcid.org/0000-0002-7507-7307
Artem V LuzhinInstitute of Gene Biology RAS, 34/5 Vavilov Str., 119334, Moscow, Russia.ORCID http://orcid.org/0000-0002-8859-5306
Ekaterina V NizovtsevaCancer Epigenetics Program, Fox Chase Cancer Center, 333 Cottman Ave., Philadelphia, PA, 19422, USA.
Alfiya SafinaDepartment of Cell Stress Biology, Roswell Park Comprehensive Cancer Center, Elm and Carlton St, Buffalo, NY, 14263, USA.
Maria E ValievaBiology Faculty, Lomonosov Moscow State University, 1 Leninskie Gory, 119992, Moscow, Russia.
Arkadiy K GolovInstitute of Gene Biology RAS, 34/5 Vavilov Str., 119334, Moscow, Russia.
Artem K VelichkoInstitute of Gene Biology RAS, 34/5 Vavilov Str., 119334, Moscow, Russia.
Alexander V LyubitelevBiology Faculty, Lomonosov Moscow State University, 1 Leninskie Gory, 119992, Moscow, Russia.
Alexey V FeofanovBiology Faculty, Lomonosov Moscow State University, 1 Leninskie Gory, 119992, Moscow, Russia.
Katerina V GurovaDepartment of Cell Stress Biology, Roswell Park Comprehensive Cancer Center, Elm and Carlton St, Buffalo, NY, 14263, USA. katerina.gurova@roswellpark.org.
Vasily M StuditskyCancer Epigenetics Program, Fox Chase Cancer Center, 333 Cottman Ave., Philadelphia, PA, 19422, USA. vasily.studitsky@fccc.edu.
Sergey V RazinInstitute of Gene Biology RAS, 34/5 Vavilov Str., 119334, Moscow, Russia. sergey.v.razin@usa.net.

Funding

Two-Spirit Films in Indigenous Cancer HealthP30CA016056 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI Dean G. Tang · 1985 to 2026
$116.6M
Modulation of cancer specific transcriptional factors with small moleculesR01CA197967 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI GUROVA, KATERINA V · 2015 to 2019
$2.0M
Mechanism of yFACT Action during Chromatin TranscriptionR01GM119398 · NIGMS · RESEARCH INST OF FOX CHASE CAN CTR · PI STILLMAN, DAVID J, STUDITSKY, VASILY M · 2017 to 2020
$1.3M
Mechanisms of PARP-1 interaction with chromatinR21CA220151 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI STUDITSKY, VASILY M · 2017 to 2019
$435k
NCI NIH HHS P30 CA016056NCI NIH HHS R01 CA197967NCI NIH HHS R21 CA220151NIGMS NIH HHS R01 GM119398
6 · The paper itself

Abstract

Recently we characterized a class of anti-cancer agents (curaxins) that disturbs DNA/histone interactions within nucleosomes. Here, using a combination of genomic and in vitro approaches, we demonstrate that curaxins strongly affect spatial genome organization and compromise enhancer-promoter communication, which is necessary for the expression of several oncogenes, including MYC. We further show that curaxins selectively inhibit enhancer-regulated transcription of chromatinized templates in cell-free conditions. Genomic studies also suggest that curaxins induce partial depletion of CTCF from its binding sites, which contributes to the observed changes in genome topology. Thus, curaxins can be classified as epigenetic drugs that target the 3D genome organization.

Indexed as

Genome, HumanAntineoplastic AgentsBinding SitesCarbazolesCCCTC-Binding FactorCell Line, TumorCell SurvivalEnhancer Elements, GeneticHumansPromoter Regions, GeneticProtein BindingTranscription, GeneticAntineoplastic AgentsCarbazolesCBLC137CCCTC-Binding Factor

Identifiers

PMID30926878
PMCPMC6441033

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.