ArticleScientific reports2019
Assessment of functional and structural changes of soil fungal and oomycete communities in holm oak declined dehesas through metabarcoding analysis.
Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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19 citing papers in PubMed.
- Genome-wide identification, characterization and expression analysis of the subtilisin-like protease gene family in Quercus ilex in response to Phytophthora cinnamomi.Scientific reports · 2026Article
- Functional Diversity and Community Composition of Soil Fungi Associated With Canopy Dieback in Araucaria araucana Forests of Contrasting Edaphic Conditions.Environmental microbiology reports · 2026Article
- Metabarcoding Unveils Seasonal Soil Microbiota Shifts and Their Influence onMicroorganisms · 2025Article
- Proteomic and Metabolomic Analysis of theBiomolecules · 2024Article
- Nanopore-Sequencing Metabarcoding for Identification of Phytopathogenic and Endophytic Fungi in Olive (Journal of fungi (Basel, Switzerland) · 2023Article
- Genetic diversity of Actinidia spp. shapes the oomycete pattern associated with Kiwifruit Vine Decline Syndrome (KVDS).Scientific reports · 2023Article
- Oomycete Soil Diversity Associated withJournal of fungi (Basel, Switzerland) · 2023Article
- Tolerant Epitypes of Elicited Holm Oak Somatic Embryos Could Be Revealed by Challenges in Dual Culture withPlants (Basel, Switzerland) · 2023Article
- Into the void: ECM fungal communities involved in the succession from rockroses to oak stands.Scientific reports · 2023Article
- Soil Chemistry and Soil History Significantly Structure Oomycete Communities inApplied and environmental microbiology · 2023Article
- Responses of a soil fungal community to severe windstorm damages in an old silver fir stand.Frontiers in microbiology · 2023Article
- Effects ofPlant direct · 2022Article
- Methods used for the study of endophytic fungi: a review on methodologies and challenges, and associated tips.Archives of microbiology · 2022Review
- Comparison of Primers for the Detection ofJournal of fungi (Basel, Switzerland) · 2022Article
- New-Generation Sequencing Technology in Diagnosis of Fungal Plant Pathogens: A Dream Comes True?Journal of fungi (Basel, Switzerland) · 2022Review
- DNA Metabarcoding and Isolation by Baiting Complement Each Other in RevealingJournal of fungi (Basel, Switzerland) · 2022Article
- Article
- Microhabitat and ectomycorrhizal effects on the establishment, growth and survival of Quercus ilex L. seedlings under drought.PloS one · 2020Article
- Oomycete metabarcoding reveals the presence ofPeerJ · 2019Article
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6 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Forest decline is nowadays a major challenge for ecosystem sustainability. Dehesas, which consists of savannah-like mediterranean ecosystems, are threatened by the holm oak decline in the south-west of Iberian Peninsula. Phytophthora cinnamomi is considered the main agent of holm oak root rot, but little is known about the relationship between diversity of soilborne microbial community and the decline syndrome of holm oak. It would be hypothesized that the changes in the structure and functionality of the soil microbiome might influence tree health status through changes in richness and diversity of beneficial organisms such as mycorrhizal species, or fungal plant pathogens such as Fusarium spp. or Alternaria spp. Total DNA of soil samples from declined oak dehesas was extracted and analyzed through metabarcoding techniques, to evaluate the specific composition and diversity of the fungal and oomycete communities and their relationship with the disease symptoms. The fungal community included a wide range of pathogens and abundance of ectomycorrhizal key taxa related with low defoliation degree. Phytophthora cinnamomi and Pythium spiculum did not appear among the most abundant oomycetes, nor were they related directly to defoliation levels. Moreover, a particular taxon belonging to the genus Trichoderma was strongly correlated with the scarcity of pathogenic Phytophthora spp. The diversity and composition of fungal and oomycete communities were related to the severity of the decline symptoms. The metabarcoding study of microbiome represents a powerful tool to develop biocontrol strategies for the management of the holm oak root rot.
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