Evidence map›Paper›PMID 30926824›Full record

ArticleScientific reports2019

Chronotype Genetic Variant in PER2 is Associated with Intrinsic Circadian Period in Humans.

Anne-Marie Chang, Jeanne F Duffy, Orfeu M Buxton, Jacqueline M Lane, Daniel Aeschbach, Clare Anderson, Andrew C Bjonnes, Sean W Cain, Daniel A Cohen, Timothy M Frayling and 15 more

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
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  3. Observational
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  6. Review
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  8. Human-Centric Lighting Research and Policy in the Melanopsin Age.Policy insights from the behavioral and brain sciences · 2023
    Article
  9. Review
  10. Review
  11. Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Circadian Rhythm and Nuclear Receptors.Advances in experimental medicine and biology · 2022
    Article
  17. Article
  18. Genetics of the human circadian clock and sleep homeostat.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2020
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Anne-Marie ChangDepartment of Biobehavioral Health, Pennsylvania State University, University Park, Pennsylvania, 16802, USA. amchang@psu.edu.
Jeanne F DuffyDivision of Sleep and Circadian Disorders, Department of Medicine and Department of Neurology, Brigham and Women's Hospital, Boston, Massachusetts, 02115, USA.
Orfeu M BuxtonDepartment of Biobehavioral Health, Pennsylvania State University, University Park, Pennsylvania, 16802, USA.ORCID http://orcid.org/0000-0001-5057-633X
Jacqueline M LaneMedical and Population Genetics, Broad Institute of Harvard and Massachusetts Institute of Technology, Cambridge, Massachusetts, 02142, USA.
Daniel AeschbachDivision of Sleep and Circadian Disorders, Department of Medicine and Department of Neurology, Brigham and Women's Hospital, Boston, Massachusetts, 02115, USA.
Clare AndersonDivision of Sleep and Circadian Disorders, Department of Medicine and Department of Neurology, Brigham and Women's Hospital, Boston, Massachusetts, 02115, USA.
Andrew C BjonnesMedical and Population Genetics, Broad Institute of Harvard and Massachusetts Institute of Technology, Cambridge, Massachusetts, 02142, USA.
Sean W CainDivision of Sleep and Circadian Disorders, Department of Medicine and Department of Neurology, Brigham and Women's Hospital, Boston, Massachusetts, 02115, USA.ORCID http://orcid.org/0000-0002-8385-1550
Daniel A CohenDivision of Sleep and Circadian Disorders, Department of Medicine and Department of Neurology, Brigham and Women's Hospital, Boston, Massachusetts, 02115, USA.
Timothy M FraylingGenetics of Complex Traits, University of Exeter Medical School, Exeter, United Kingdom.
Joshua J GooleyDivision of Sleep and Circadian Disorders, Department of Medicine and Department of Neurology, Brigham and Women's Hospital, Boston, Massachusetts, 02115, USA.
Samuel E JonesGenetics of Complex Traits, University of Exeter Medical School, Exeter, United Kingdom.ORCID http://orcid.org/0000-0003-0153-922X
Elizabeth B KlermanDivision of Sleep and Circadian Disorders, Department of Medicine and Department of Neurology, Brigham and Women's Hospital, Boston, Massachusetts, 02115, USA.
Steven W LockleyDivision of Sleep and Circadian Disorders, Department of Medicine and Department of Neurology, Brigham and Women's Hospital, Boston, Massachusetts, 02115, USA.
Mirjam MunchDivision of Sleep and Circadian Disorders, Department of Medicine and Department of Neurology, Brigham and Women's Hospital, Boston, Massachusetts, 02115, USA.
Shantha M W RajaratnamDivision of Sleep and Circadian Disorders, Department of Medicine and Department of Neurology, Brigham and Women's Hospital, Boston, Massachusetts, 02115, USA.
Melanie RuegerDivision of Sleep and Circadian Disorders, Department of Medicine and Department of Neurology, Brigham and Women's Hospital, Boston, Massachusetts, 02115, USA.
Martin K RutterDivision of Endocrinology, Diabetes & Gastroenterology, School of Medical Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK.
Nayantara SanthiDivision of Sleep and Circadian Disorders, Department of Medicine and Department of Neurology, Brigham and Women's Hospital, Boston, Massachusetts, 02115, USA.
Karine ScheuermaierDivision of Sleep and Circadian Disorders, Department of Medicine and Department of Neurology, Brigham and Women's Hospital, Boston, Massachusetts, 02115, USA.
Eliza Van ReenDivision of Sleep and Circadian Disorders, Department of Medicine and Department of Neurology, Brigham and Women's Hospital, Boston, Massachusetts, 02115, USA.
Michael N WeedonGenetics of Complex Traits, University of Exeter Medical School, Exeter, United Kingdom.
Charles A CzeislerDivision of Sleep and Circadian Disorders, Department of Medicine and Department of Neurology, Brigham and Women's Hospital, Boston, Massachusetts, 02115, USA.
Frank A J L ScheerDivision of Sleep and Circadian Disorders, Department of Medicine and Department of Neurology, Brigham and Women's Hospital, Boston, Massachusetts, 02115, USA. fscheer@bwh.harvard.edu.ORCID http://orcid.org/0000-0002-2014-7582
Richa SaxenaDivision of Sleep and Circadian Disorders, Department of Medicine and Department of Neurology, Brigham and Women's Hospital, Boston, Massachusetts, 02115, USA.ORCID http://orcid.org/0000-0003-2233-1065

Funding

Harvard Clinical and Translational Science CenterUL1TR001102 · NCATS · HARVARD MEDICAL SCHOOL · PI NADLER, LEE MARSHALL · 2013 to 2017
$106.2M
TRANSPLANTATION ANALYSIS OF CIRCADIAN RHYTHMS AND AGINGP01AG009975 · NIA · BRIGHAM AND WOMEN'S HOSPITAL · PI KLERMAN, ELIZABETH B. · 1991 to 2018
$23.1M
TRAINING IN SLEEP, CIRCADIAN &RESPIRATORY NEUROBIOLOGYT32HL007901 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI Charles A Czeisler · 1998 to 2026
$18.5M
TREATMENT OF CIRCADIAN SLEEP DISORDERS WITH BRIGHT LIGHTR01MH045130 · NIMH · BRIGHAM AND WOMEN'S HOSPITAL · PI LOCKLEY, STEVEN W · 1989 to 2010
$4.9M
Leveraging Family Data to Identify Genetic Variants for Sleep ApneaR01HL113338 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI LIN, XIHONG, REDLINE, SUSAN S. · 2012 to 2016
$4.4M
Role of Meal Timing in Efficacy of Bariatric Surgery in Obese IndividualsR01HL140574 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI SCHEER, FRANK A, TAVAKKOLI, ALI · 2017 to 2023
$4.2M
Genetics of chronotype and impact on metabolic diseaseR01DK107859 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI Richa Saxena · 2016 to 2026
$4.0M
Melatonin and Receptor Gene Variant: Linking Circadian System and Type 2 DiabetesR01DK102696 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI SAXENA, RICHA, SCHEER, FRANK A · 2015 to 2019
$3.8M
Impact of Malatonin, Food Timing and Receptor Variant on Type 2 Diabetes RiskR01DK105072 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI SAXENA, RICHA, SCHEER, FRANK A · 2016 to 2020
$3.2M
Sleep duration required to restore performance during chronic sleep restrictionR01HL114088 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI KLERMAN, ELIZABETH B. · 2012 to 2015
$3.1M
Meal Time Effects on Metabolic Health.R01DK099512 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI SCHEER, FRANK A · 2014 to 2017
$2.8M
Adaptation of Circadian Responses to Light TreatmentR01HL077453 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI DUFFY, JEANNE F · 2004 to 2010
$2.6M
Medical Research Council MR/P012167/1NCATS NIH HHS UL1 TR001102NCCIH NIH HHS R21 AT002571NHLBI NIH HHS F32 HL078360NHLBI NIH HHS K01 HL115458NHLBI NIH HHS K01 HL136884NHLBI NIH HHS K24 HL105664NHLBI NIH HHS R01 HL077399NHLBI NIH HHS R01 HL077453NHLBI NIH HHS R01 HL080978NHLBI NIH HHS R01 HL093279NHLBI NIH HHS R01 HL094654NHLBI NIH HHS R01 HL094806NHLBI NIH HHS R01 HL113338NHLBI NIH HHS R01 HL114088NHLBI NIH HHS R01 HL118601NHLBI NIH HHS R01 HL140574NHLBI NIH HHS R21 HL121728NHLBI NIH HHS T32 HL007901NIA NIH HHS F32 AG031690NIA NIH HHS P01 AG009975NIA NIH HHS R01 AG006072NICHD NIH HHS R21 HD086392NIDDK NIH HHS F32 DK102323NIDDK NIH HHS R01 DK099512NIDDK NIH HHS R01 DK102696NIDDK NIH HHS R01 DK105072NIDDK NIH HHS R01 DK107859NIDDK NIH HHS R21 DK089378NIGMS NIH HHS R01 GM105018NIMH NIH HHS R01 MH045130NINDS NIH HHS R01 NS054277
6 · The paper itself

Abstract

The PERIOD2 (PER2) gene is a core molecular component of the circadian clock and plays an important role in the generation and maintenance of daily rhythms. Rs35333999, a missense variant of PER2 common in European populations, has been shown to associate with later chronotype. Chronotype relates to the timing of biological and behavioral activities, including when we sleep, eat, and exercise, and later chronotype is associated with longer intrinsic circadian period (cycle length), a fundamental property of the circadian system. Thus, we tested whether this PER2 variant was associated with circadian period and found significant associations with longer intrinsic circadian period as measured under forced desynchrony protocols, the 'gold standard' for intrinsic circadian period assessment. Minor allele (T) carriers exhibited significantly longer circadian periods when determinations were based on either core body temperature or plasma melatonin measurements, as compared to non-carriers (by 12 and 11 min, respectively; accounting for ~7% of inter-individual variance). These findings provide a possible underlying biological mechanism for inter-individual differences in chronotype, and support the central role of PER2 in the human circadian timing system.

Indexed as

Genetic VariationAdultAgedAllelesCircadian ClocksCircadian RhythmFemaleGenotypeHumansMaleMiddle AgedPeriod Circadian ProteinsPhenotypePolymorphism, Single NucleotidePER2 protein, humanPeriod Circadian Proteins

Identifiers

PMID30926824
PMCPMC6440993

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.