Evidence map›Paper›PMID 30925895›Full record

ArticleBMC genomics2019

The identification of differentially expressed genes between extremes of placental efficiency in maternal line gilts on day 95 of gestation.

Shanice K Krombeen, Vijay Shankar, Rooksana E Noorai, Christopher A Saski, Julia L Sharp, Matthew E Wilson, Tiffany A Wilmoth

Abstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Shanice K KrombeenDepartment of Animal and Veterinary Science, Clemson University, Clemson, SC, 29634, USA.
Vijay ShankarCenter for Human Genetics, Clemson University, Greenwood, SC, 29646, USA.
Rooksana E NooraiGenomics and Bioinformatics Facility, Clemson University, Clemson, SC, 29634, USA.
Christopher A SaskiDepartment of Plant and Environmental Sciences, Clemson University, Clemson, SC, 29634, USA.
Julia L SharpDepartment of Statistics, Colorado State University, Fort Collins, CO, 80523, USA.
Matthew E WilsonDivision of Animal and Nutritional Sciences, West Virginia University, Morgantown, WV, 26506, USA.
Tiffany A WilmothDepartment of Animal and Veterinary Science, Clemson University, Clemson, SC, 29634, USA. twilmot@clemson.edu.ORCID http://orcid.org/0000-0001-7652-2698

Funding

The role of acetate fermentation in Entamoeba histolytica growth and infectionP20GM109094 · NIGMS · CLEMSON UNIVERSITY · PI MORRIS, MEREDITH T · 2016 to 2020
$10.4M
National Institute of General Medical Sciences P20GM109094NIGMS NIH HHS P20 GM109094
6 · The paper itself

Abstract

backgroundPlacental efficiency (PE) describes the relationship between placental and fetal weights (fetal wt/placental wt). Within litters, PE can vary drastically, resulting in similarly sized pigs associated with differently sized placentas, up to a 25% weight difference. However, the mechanisms enabling the smaller placenta to grow a comparable littermate are unknown. To elucidate potential mechanisms, morphological measurements and gene expression profiles in placental and associated endometrial tissues of high PE and low PE feto-placental units were compared. Tissue samples were obtained from eight maternal line gilts during gestational day 95 ovario-hysterectomies. RNA was extracted from tissues of feto-placental units with the highest and lowest PE in each litter and sequenced.

resultsMorphological measurements, except placental weight, were not different (P > 0.05) between high and low PE. No DEG were identified in the endometrium and 214 DEG were identified in the placenta (FDR < 0.1), of which 48% were upregulated and 52% were downregulated. Gene ontology (GO) analysis revealed that a large percentage of DEG were involved in catalytic activity, binding, transporter activity, metabolism, biological regulation, and localization. Four GO terms were enriched in the upregulated genes and no terms were enriched in the downregulated genes (FDR < 0.05). Eight statistically significant correlations (P < 0.05) were identified between the morphological measurements and DEG.

conclusionMorphological measures between high and low PE verified comparisons were of similarly sized pigs grown on different sized placentas, and indicated that any negative effects of a reduced placental size on fetal growth were not evident by day 95. The identification of DEG in the placenta, but absence of DEG in the endometrium confirmed that the placenta responds to the fetus. The GO analyses provided evidence that extremes of PE are differentially regulated, affecting components of placental transport capacity like nutrient transport and blood flow. However, alternative GO terms were identified, indicating the complexity of the relationship between placental and fetal weights. These findings support the use of PE as a marker of placental function and provide novel insight into the genetic control of PE, but further research is required to make PE production applicable.

Indexed as

Gene Expression RegulationAnimalsEndometriumFemaleFetal WeightGene OntologyGestational AgeLitter SizePlacentaPregnancySwineEndometriumFetal weightGene expressionPigsPlacentaPlacental efficiencyPlacental weight

Identifiers

PMID30925895
PMCPMC6441153

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.