Evidence map›Paper›PMID 30925871›Full record

ArticleBMC biology2019

The genome of the giant Nomura's jellyfish sheds light on the early evolution of active predation.

Hak-Min Kim, Jessica A Weber, Nayoung Lee, Seung Gu Park, Yun Sung Cho, Youngjune Bhak, Nayun Lee, Yeonsu Jeon, Sungwon Jeon, Victor Luria and 13 more

Open access · goldAbstract read
In one paragraph

Article in BMC biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
19.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 60 citations in OpenAlex.

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  11. Genome assembly and transcriptomic analyses of the repeatedly rejuvenating jellyfish Turritopsis dohrnii.DNA research : an international journal for rapid publication of reports on genes and genomes · 2023
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  12. Small RNAs in Cnidaria: A review.Evolutionary applications · 2023
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  16. A novel regulatory gene promotes novel cell fate by suppressing ancestral fate in the sea anemoneProceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 10 institutions in 3 countries.

Hak-Min KimKorean Genomics Industrialization Center (KOGIC), Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, Republic of Korea.
Jessica A WeberDepartment of Genetics, Harvard Medical School, Boston, MA, 02115, USA.
Nayoung LeeEcological Risk Research Division, Korea Institute of Ocean Science and Technology (KIOST), Geoje, 53201, Republic of Korea.
Seung Gu ParkKorean Genomics Industrialization Center (KOGIC), Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, Republic of Korea.
Yun Sung ChoKorean Genomics Industrialization Center (KOGIC), Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, Republic of Korea.
Youngjune BhakKorean Genomics Industrialization Center (KOGIC), Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, Republic of Korea.
Nayun LeeEcological Risk Research Division, Korea Institute of Ocean Science and Technology (KIOST), Geoje, 53201, Republic of Korea.
Yeonsu JeonKorean Genomics Industrialization Center (KOGIC), Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, Republic of Korea.
Sungwon JeonKorean Genomics Industrialization Center (KOGIC), Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, Republic of Korea.
Victor LuriaDepartment of Systems Biology, Harvard Medical School, Boston, MA, 02115, USA.
Amir KargerIT - Research Computing, Harvard Medical School, Boston, MA, 02115, USA.
Marc W KirschnerDepartment of Systems Biology, Harvard Medical School, Boston, MA, 02115, USA.
Ye Jin JoEcological Risk Research Division, Korea Institute of Ocean Science and Technology (KIOST), Geoje, 53201, Republic of Korea.
Seonock WooFaculty of Marine Environmental Science, University of Science and Technology (UST), Geoje, 53201, Republic of Korea.
Kyoungsoon ShinBallast Water Center, Korea Institute of Ocean Science and Technology (KIOST), Geoje, 53201, Republic of Korea.
Oksung ChungClinomics Inc., Ulsan, 44919, Republic of Korea.
Jae-Chun RyuCellular and Molecular Toxicology Laboratory, Center for Environment, Health and Welfare Research, Korea Institute of Science and Technology (KIST), Seoul, 02792, Republic of Korea.
Hyung-Soon YimMarine Biotechnology Research Center, Korea Institute of Ocean Science and Technology (KIOST), Busan, 49111, Republic of Korea.
Jung-Hyun LeeMarine Biotechnology Research Center, Korea Institute of Ocean Science and Technology (KIOST), Busan, 49111, Republic of Korea.
Jeremy S EdwardsChemistry and Chemical Biology, UNM Comprehensive Cancer Center, University of New Mexico, Albuquerque, NM, 87131, USA.
Andrea ManicaDepartment of Zoology, University of Cambridge, Downing Street, Cambridge, CB2 3EJ, UK.
Jong BhakKorean Genomics Industrialization Center (KOGIC), Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, Republic of Korea. jongbhak@gmail.com.
Seungshic YumEcological Risk Research Division, Korea Institute of Ocean Science and Technology (KIOST), Geoje, 53201, Republic of Korea. syum@kiost.ac.kr.
Korea Institute of Ocean Science and Technology · KRUlsan National Institute of Science and Technology · KRHarvard University · USCenter for Systems Biology · USGenome Research Foundation · KRKorea Institute of Science and Technology · KRKorea University of Science and Technology · KRNew Mexico Cancer Center · USUniversity of Cambridge · GBUniversity of New Mexico · US

Funding

Systems Analysis of cell type differentiation in Xenopus developmentR01HD073104 · NICHD · HARVARD MEDICAL SCHOOL · PI KIRSCHNER, MARC WALLACE, PESHKIN, LEON · 2012 to 2022
$6.7M
Proteomics of Cell Signaling in Embryogenesis.R01HD091846 · NICHD · HARVARD MEDICAL SCHOOL · PI GYGI, STEVEN P, KIRSCHNER, MARC WALLACE · 2017 to 2021
$3.1M
NICHD NIH HHS R01 HD073104NICHD NIH HHS R01 HD091846
6 · The paper itself

Abstract

backgroundUnique among cnidarians, jellyfish have remarkable morphological and biochemical innovations that allow them to actively hunt in the water column and were some of the first animals to become free-swimming. The class Scyphozoa, or true jellyfish, are characterized by a predominant medusa life-stage consisting of a bell and venomous tentacles used for hunting and defense, as well as using pulsed jet propulsion for mobility. Here, we present the genome of the giant Nomura's jellyfish (Nemopilema nomurai) to understand the genetic basis of these key innovations.

resultsWe sequenced the genome and transcriptomes of the bell and tentacles of the giant Nomura's jellyfish as well as transcriptomes across tissues and developmental stages of the Sanderia malayensis jellyfish. Analyses of the Nemopilema and other cnidarian genomes revealed adaptations associated with swimming, marked by codon bias in muscle contraction and expansion of neurotransmitter genes, along with expanded Myosin type II family and venom domains, possibly contributing to jellyfish mobility and active predation. We also identified gene family expansions of Wnt and posterior Hox genes and discovered the important role of retinoic acid signaling in this ancient lineage of metazoans, which together may be related to the unique jellyfish body plan (medusa formation).

conclusionsTaken together, the Nemopilema jellyfish genome and transcriptomes genetically confirm their unique morphological and physiological traits, which may have contributed to the success of jellyfish as early multi-cellular predators.

Indexed as

Evolution, MolecularPredatory BehaviorAnimalsBiological EvolutionGenomePhylogenyScyphozoade novo genome assemblyJellyfish mobilityMedusa structure formationScyphozoa

Identifiers

PMID30925871
PMCPMC6441219
OpenAlexW2942048242

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.