Evidence map›Paper›PMID 30925835›Full record

ArticleBiomolecules2019

Inhibition of Oncogenic Kinases: An In Vitro Validated Computational Approach Identified Potential Multi-Target Anticancer Compounds.

Nazia Ikram, Muhammad Usman Mirza, Michiel Vanmeert, Matheus Froeyen, Outi M H Salo-Ahen, Muhammad Tahir, Aamer Qazi, Sarfraz Ahmad

Open access · goldAbstract read
In one paragraph

Article in Biomolecules, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
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  7. Wound Healing Potential and In Silico Appraisal ofBioMed research international · 2022
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  11. Discovery of HIV entry inhibitors via a hybrid CXCR4 and CCR5 receptor pharmacophore-based virtual screening approach.European journal of pharmaceutical sciences : official journal of the European Federation for Pharmaceutical Sciences · 2020
    Article
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  17. Quantification of Berberine inAntioxidants (Basel, Switzerland) · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 4 countries.

Nazia IkramInstitute of Molecular Biology and Biotechnology, The University of Lahore, 54000 Lahore, Pakistan. naxiaikram@gmail.com.
Muhammad Usman MirzaCentre for Research in Molecular Medicine, The University of Lahore, 54000 Lahore, Pakistan. muhammadusman.mirza@kuleuven.be.ORCID 0000-0001-9120-2414
Michiel VanmeertDepartment of Pharmaceutical and Pharmacological Sciences, Rega Institute for Medical Research, Medicinal Chemistry, University of Leuven, B-3000 Leuven, Belgium. michiel.vanmeert@kuleuven.be.ORCID 0000-0001-5810-4935
Matheus FroeyenDepartment of Pharmaceutical and Pharmacological Sciences, Rega Institute for Medical Research, Medicinal Chemistry, University of Leuven, B-3000 Leuven, Belgium. mathy.froeyen@kuleuven.be.
Outi M H Salo-AhenStructural Bioinformatics Laboratory, Faculty of Science and Engineering, Biochemistry, Åbo Akademi University, FI-20520 Turku, Finland. outi.salo-ahen@abo.fi.
Muhammad TahirCentre for Research in Molecular Medicine, The University of Lahore, 54000 Lahore, Pakistan. muhammad.tahir@imbb.uol.edu.pk.
Aamer QaziCentre for Research in Molecular Medicine, The University of Lahore, 54000 Lahore, Pakistan. aamer.qazi@imbb.uol.edu.pk.
Sarfraz AhmadInstitute of Pharmaceutical Sciences, Riphah University, 54000 Lahore, Pakistan. sarfraz.ahmad@riphah.edu.pk.ORCID 0000-0003-0059-477X
University of Lahore · PKRega Institute for Medical Research · BEÅbo Akademi University · FIRiphah International University · PK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tumorigenesis in humans is a multistep progression that imitates genetic changes leading to cell transformation and malignancy. Oncogenic kinases play a central role in cancer progression, rendering them putative targets for the design of anti-cancer drugs. The presented work aims to identify the potential multi-target inhibitors of oncogenic receptor tyrosine kinases (RTKs) and serine/threonine kinases (STKs). For this, chemoinformatics and structure-based virtual screening approaches were combined with an in vitro validation of lead hits on both cancerous and non-cancerous cell lines. A total of 16 different kinase structures were screened against ~739,000 prefiltered compounds using diversity selection, after which the top hits were filtered for promising pharmacokinetic properties. This led to the identification of 12 and 9 compounds against RTKs and STKs, respectively. Molecular dynamics (MD) simulations were carried out to better comprehend the stability of the predicted hit kinase-compound complexes. Two top-ranked compounds against each kinase class were tested in vitro for cytotoxicity, with compound F34 showing the most promising inhibitory activity in HeLa, HepG2, and Vero cell lines with IC

Indexed as

Molecular Docking SimulationMolecular Dynamics SimulationAnimalsAntineoplastic AgentsCell ProliferationCell SurvivalChlorocebus aethiopsDrug Evaluation, PreclinicalDrug Screening Assays, AntitumorHeLa CellsHep G2 CellsHumansMolecular StructureProtein Kinase InhibitorsProtein KinasesVero CellsAntineoplastic AgentsProtein Kinase InhibitorsProtein Kinasescancercell linesin vitromolecular dockingmolecular dynamics simulationsmulti-target inhibitorsreceptor tyrosine kinasesserine/threonine kinases

Identifiers

PMID30925835
PMCPMC6523505
OpenAlexW2925089146

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.