Evidence map›Paper›PMID 30925293›Full record

ArticleRedox biology2019

Monitoring structural modulation of redox-sensitive proteins in cells with MS-CETSA.

Wendi Sun, Lingyun Dai, Han Yu, Brenda Puspita, Tianyun Zhao, Feng Li, Justin L Tan, Yan Ting Lim, Ming Wei Chen, Radoslaw M Sobota and 3 more

Open access · goldAbstract read
In one paragraph

Article in Redox biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
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  9. Chemoproteomics for Plasmodium Parasite Drug Target Discovery.Chembiochem : a European journal of chemical biology · 2021
    Review
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  13. Prdx1 Interacts with ASK1 upon Exposure to HAntioxidants (Basel, Switzerland) · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 3 countries.

Wendi SunSchool of Biological Sciences, Nanyang Technological University, 637551, Singapore.
Lingyun DaiSchool of Biological Sciences, Nanyang Technological University, 637551, Singapore.
Han YuSchool of Biological Sciences, Nanyang Technological University, 637551, Singapore.
Brenda PuspitaSchool of Biological Sciences, Nanyang Technological University, 637551, Singapore.
Tianyun ZhaoSchool of Biological Sciences, Nanyang Technological University, 637551, Singapore.
Feng LiCancer Science Institute of Singapore, National University of Singapore, Singapore 117599, Singapore.
Justin L TanCancer Science Institute of Singapore, National University of Singapore, Singapore 117599, Singapore; Genome Institute of Singapore, A*STAR, 138672, Singapore.
Yan Ting LimSchool of Biological Sciences, Nanyang Technological University, 637551, Singapore.
Ming Wei ChenSchool of Biological Sciences, Nanyang Technological University, 637551, Singapore.
Radoslaw M SobotaInstitute of Molecular and Cell Biology, A*STAR, 138673, Singapore.
Daniel G TenenCancer Science Institute of Singapore, National University of Singapore, Singapore 117599, Singapore; Harvard Stem Cell Institute, Harvard Medical School, Boston, MA 02115, USA.
Nayana PrabhuSchool of Biological Sciences, Nanyang Technological University, 637551, Singapore.
Pär NordlundSchool of Biological Sciences, Nanyang Technological University, 637551, Singapore; Institute of Molecular and Cell Biology, A*STAR, 138673, Singapore; Department of Oncology and Pathology, Karolinska Institutet, Stockholm, 17177, Sweden. Electronic address: par.nordlund@ki.se.
Nanyang Technological University · SGHarvard Stem Cell Institute · USInstitute of Molecular and Cell Biology · SGKarolinska Institutet · SENational University Cancer Institute, Singapore · SGNational University of Singapore · SG

Funding

Transcriptional and epigenetic heterogeneity of stem/progenitor cellsP01HL131477 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI DANIEL G TENEN · 2017 to 2026
$24.6M
Mechanisms of regulation by RNA in acute myeloid leukemiaR35CA197697 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI TENEN, DANIEL G · 2015 to 2021
$7.1M
NCI NIH HHS R35 CA197697NHLBI NIH HHS P01 HL131477
6 · The paper itself

Abstract

Reactive oxygen species (ROS) induce different cellular stress responses but can also mediate cellular signaling. Augmented levels of ROS are associated with aging, cancer as well as various metabolic and neurological disorders. ROS can also affect the efficacy and adverse effects of drugs. Although proteins are key mediators of most ROS effects, direct studies of ROS-modulated-protein function in the cellular context are very challenging. Therefore the understanding of specific roles of different proteins in cellular ROS responses is still relatively rudimentary. In the present work we show that Mass Spectrometry-Cellular Thermal Shift Assay (MS-CETSA) can directly monitor ROS and redox modulations of protein structure at the proteome level. By altering ROS levels in cultured human hepatocellular carcinoma cell lysates and intact cells, we detected CETSA responses in many proteins known to be redox sensitive, and also revealed novel candidate ROS sensitive proteins. Studies in intact cells treated with hydrogen peroxide and sulfasalazine, a ROS modulating drug, identified not only proteins that are directly modified, but also proteins reporting on downstream cellular effects. Comprehensive changes are seen on rate-limiting proteins regulating key cellular processes, including known redox control systems, protein degradation, epigenetic control and protein translational processes. Interestingly, concerted shifts on ATP-binding proteins revealed redox-induced modulation of ATP levels, which likely control many cellular processes. Collectively, these studies establish CETSA as a novel method for cellular studies of redox modulations of proteins, which implicated in a wide range of processes and for the discovery of CETSA-based biomarkers reporting on the efficacy as well as adverse effects of drugs.

Indexed as

Oxidation-ReductionProteomicsAdenosine TriphosphateBiomarkersCell Line, TumorChromatography, LiquidGlutathioneHumansHydrogen PeroxideMass SpectrometryProteinsReactive Oxygen SpeciesStructure-Activity RelationshipWorkflowAdenosine TriphosphateBiomarkersGlutathioneHydrogen PeroxideProteinsReactive Oxygen SpeciesATP levelsCellular thermal shift assayGlutathioneQuantitative proteomicsReactive cysteinesReactive oxygen speciesSulfasalazine

Identifiers

PMID30925293
PMCPMC6439307
OpenAlexW2920856425

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.