Evidence map›Paper›PMID 30925180›Full record

ArticlePLoS biology2019

Evolthon: A community endeavor to evolve lab evolution.

Sivan Kaminski Strauss, Dvir Schirman, Ghil Jona, Aaron N Brooks, Aditya M Kunjapur, Alex N Nguyen Ba, Alice Flint, Andras Solt, Andreas Mershin, Atray Dixit and 53 more

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 35 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

63 authors at 18 institutions in 7 countries.

Sivan Kaminski StraussDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0002-4220-4592
Dvir SchirmanDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0001-5175-0176
Ghil JonaDepartment of Life Sciences Core Facilities, Weizmann Institute of Science, Rehovot, Israel.
Aaron N BrooksEuropean Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany.ORCID 0000-0002-5309-7307
Aditya M KunjapurDepartment of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America.ORCID 0000-0001-6869-9530
Alex N Nguyen BaDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, United States of America.ORCID 0000-0003-1357-6386
Alice FlintDepartment of Biochemistry, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0002-9912-119X
Andras SoltDepartment of Biochemistry, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0003-4035-8421
Andreas MershinMassachusetts Institute of Technology, Center for Bits and Atoms, Cambridge, Massachusetts, United States of America.
Atray DixitBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Avihu H YonaPhysics of Living Systems, Department of Physics, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America.
Bálint CsörgőInstitute of Biochemistry, Biological Research Centre of the Hungarian Academy of Sciences, Szeged, Hungary.
Bede Phillip BusbyEuropean Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany.ORCID 0000-0003-3410-9998
Bianca P HennigEuropean Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany.ORCID 0000-0002-7733-8160
Csaba PálInstitute of Biochemistry, Biological Research Centre of the Hungarian Academy of Sciences, Szeged, Hungary.
Daniel SchraivogelEuropean Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany.ORCID 0000-0002-5734-6980
Daniel SchultzDepartment of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, Hanover, New Hampshire, United States of America.
David G WernickDepartment of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel.
Deepa AgasheNational Centre for Biological Sciences, Bangalore, India.ORCID 0000-0002-0374-8159
Dikla LeviDepartment of Life Sciences Core Facilities, Weizmann Institute of Science, Rehovot, Israel.
Dmitry ZabezhinskyDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
Dor RussFaculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel.
Ehud SassDepartment of Structural Biology, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0003-4302-1496
Einat TamarFaculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel.
Elad HerzDepartment of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel.
Emmanuel D LevyDepartment of Structural Biology, Weizmann Institute of Science, Rehovot, Israel.
George M ChurchDepartment of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America.
Idan YelinFaculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel.ORCID 0000-0003-2515-4113
Iftach NachmanDepartment of Biochemistry and Molecular Biology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel.ORCID 0000-0002-4667-0398
Jeffrey E GerstDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0002-8411-6881
Joseph M GeorgesonDepartment of Structural Biology, Weizmann Institute of Science, Rehovot, Israel.
Katarzyna P AdamalaUniversity of Minnesota, Minneapolis, Minnesota, United States of America.ORCID 0000-0003-1066-7207
Lars M SteinmetzEuropean Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany.ORCID 0000-0002-3962-2865
Marc RübsamEuropean Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany.
Markus RalserDepartment of Biochemistry, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0001-9535-7413
Michael KlutsteinFaculty of Dental Medicine, The Hebrew University of Jerusalem, Jerusalem, Israel.ORCID 0000-0002-4041-3112
Michael M DesaiDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, United States of America.
Nilima WalunjkarNational Centre for Biological Sciences, Bangalore, India.
Ning YinFaculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel.
Noa Aharon HefetzDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
Noah JakimoMassachusetts Institute of Technology, Center for Bits and Atoms, Cambridge, Massachusetts, United States of America.
Olga SnitserFaculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel.
Omri AdiniFaculty of Dental Medicine, The Hebrew University of Jerusalem, Jerusalem, Israel.
Prashant KumarDepartment of Biochemistry, University of Cambridge, Cambridge, United Kingdom.
Rachel Soo Hoo SmithMassachusetts Institute of Technology, Center for Bits and Atoms, Cambridge, Massachusetts, United States of America.
Razi ZeidanDepartment of Biochemistry and Molecular Biology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel.ORCID 0000-0002-6012-1563
Ronen HazanFaculty of Dental Medicine, The Hebrew University of Jerusalem, Jerusalem, Israel.
Roni RakDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0002-3843-3659
Roy KishonyFaculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel.
Shannon JohnsonMassachusetts Institute of Technology, Center for Bits and Atoms, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-6758-224X
Shira NourielFaculty of Dental Medicine, The Hebrew University of Jerusalem, Jerusalem, Israel.
Sibylle C VoneschEuropean Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany.ORCID 0000-0003-2485-1048
Simmie FosterHarvard Medical School, Boston, Massachusetts, United States of America.
Tal DaganInstitute of Microbiology, Kiel University, Kiel, Germany.ORCID 0000-0002-9042-192X
Tanita WeinInstitute of Microbiology, Kiel University, Kiel, Germany.
Thrasyvoulos KarydisMassachusetts Institute of Technology, Center for Bits and Atoms, Cambridge, Massachusetts, United States of America.ORCID 0000-0001-7148-9665
Timothy M WannierDepartment of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America.ORCID 0000-0002-4165-4751
Timothy StilesMassachusetts Institute of Technology, Center for Bits and Atoms, Cambridge, Massachusetts, United States of America.ORCID 0000-0001-7069-2426
Viridiana Olin-SandovalDepartment of Biochemistry, University of Cambridge, Cambridge, United Kingdom.
William F MuellerEuropean Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany.
Yinon M Bar-OnDepartment of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0001-8477-609X
Orna DahanDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
Yitzhak PilpelDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0003-3200-9344
Weizmann Institute of Science · ILEuropean Molecular Biology Laboratory · DEHarvard University · USTechnion – Israel Institute of Technology · ILUniversity of Cambridge · GBHebrew University of Jerusalem · ILMIT-Harvard Center for Ultracold Atoms · USChristian-Albrechts-Universität zu Kiel · DEHUN-REN Szegedi Biológiai Kutatóközpont · HUNational Centre for Biological Sciences · INTel Aviv University · ILBoston Children's Hospital · USBroad Institute · USDartmouth College · USEuropean Bioinformatics Institute · GBLiving Systems (United States) · USSomerville Hospital · USUniversity of Minnesota · US

Funding

Microbial Adaptation and the Statistics of Epistasis and PleiotropyR01GM104239 · NIGMS · HARVARD UNIVERSITY · PI DESAI, MICHAEL M · 2013 to 2025
$4.5M
NIGMS NIH HHS R01 GM104239
6 · The paper itself

Abstract

In experimental evolution, scientists evolve organisms in the lab, typically by challenging them to new environmental conditions. How best to evolve a desired trait? Should the challenge be applied abruptly, gradually, periodically, sporadically? Should one apply chemical mutagenesis, and do strains with high innate mutation rate evolve faster? What are ideal population sizes of evolving populations? There are endless strategies, beyond those that can be exposed by individual labs. We therefore arranged a community challenge, Evolthon, in which students and scientists from different labs were asked to evolve Escherichia coli or Saccharomyces cerevisiae for an abiotic stress-low temperature. About 30 participants from around the world explored diverse environmental and genetic regimes of evolution. After a period of evolution in each lab, all strains of each species were competed with one another. In yeast, the most successful strategies were those that used mating, underscoring the importance of sex in evolution. In bacteria, the fittest strain used a strategy based on exploration of different mutation rates. Different strategies displayed variable levels of performance and stability across additional challenges and conditions. This study therefore uncovers principles of effective experimental evolutionary regimens and might prove useful also for biotechnological developments of new strains and for understanding natural strategies in evolutionary arms races between species. Evolthon constitutes a model for community-based scientific exploration that encourages creativity and cooperation.

Indexed as

Biological EvolutionEscherichia coliHumansModels, GeneticMutationSaccharomyces cerevisiaeTemperature

Identifiers

PMID30925180
PMCPMC6440615
OpenAlexW2929673107

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.