Evidence map›Paper›PMID 30924329›Full record

ArticleACS chemical neuroscience2019

Prolines Affect the Nucleation Phase of Amyloid Fibrillation Reaction; Mutational Analysis of Human Stefin B.

Samra Hasanbašić, Ajda Taler-Verčič, Vida Puizdar, Veronika Stoka, Magda Tušek Žnidarič, Andrej Vilfan, Selma Berbić, Eva Žerovnik

Open access · hybridAbstract read
In one paragraph

Article in ACS chemical neuroscience, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Conserved proline residues prevent dimerization and aggregation in the β-lactamase BlaC.Protein science : a publication of the Protein Society · 2024
    Article
  3. Article
  4. Article
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Samra HasanbašićJožef Stefan International Postgraduate School , Jamova 39 , 1000 Ljubljana , Slovenia.
Ajda Taler-VerčičCenter of Excellence for Integrated Approaches in Chemistry and Biology of Proteins , Jamova 39 , 1000 Ljubljana , Slovenia.
Vida Puizdar
Veronika StokaJožef Stefan International Postgraduate School , Jamova 39 , 1000 Ljubljana , Slovenia.
Magda Tušek ŽnidaričDepartment of Biotechnology and Systems Biology , National Institute of Biology , Večna pot 111 , 1000 Ljubljana , Slovenia.
Selma BerbićFaculty of Pharmacy, Department of Biochemistry , University of Tuzla , Univerzitetska 1 , 75000 Tuzla , Bosnia and Herzegovina.
Eva ŽerovnikJožef Stefan International Postgraduate School , Jamova 39 , 1000 Ljubljana , Slovenia.ORCID 0000-0002-9793-8200
Jožef Stefan Institute · SIJožef Stefan International Postgraduate School · SIUniversity of Tuzla · BACentre of Excellence for Integrated Approaches in Chemistry and Biology of Proteins · SINational Institute of Biology · SI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Proline residues play a prominent role in protein folding and aggregation. We investigated the influence of single prolines and their combination on oligomerization and the amyloid fibrillation reaction of human stefin B (stB). The proline mutants influenced the distribution of oligomers between monomers, dimers, and tetramers as shown by the size-exclusion chromatography. Only P74S showed higher oligomers, reminiscent of the molten globule reported previously for the P74S of stB-Y31 variant. The proline mutants also inhibited to various degree the amyloid fibrillation reaction. At 30 and 37 °C, inhibition was complete for the P74S single mutant, two double mutants (P6L P74S and P74S P79S), and for the triple mutant P6L P11S P74S. At 30 °C the single mutant P6L completely inhibited the reaction, while P11S and P79S formed amyloid fibrils with a prolonged lag phase. P36D did not show a lag phase, reminiscent of a downhill polymerization model. At 37 °C in addition to P36D, P11S, and P79S, P6L and P11S P74S also started to fibrillate; however, the yield of the fibrils was much lower than that of the wild-type protein as judged by transmission electron microscopy. Thus, Pro 74 cis/trans isomerization proves to be the key event, acting as a switch toward an amyloid transition. Using our previous model of nucleation and growth, we simulated the kinetics of all the mutants that exhibited sigmoidal fibrillation curves. To our surprise, the nucleation phase was most affected by Pro cis/trans isomerism, rather than the fibril elongation phase.

Indexed as

AmyloidCystatin BDNA Mutational AnalysisHumansMutationProlineProtein Aggregation, PathologicalAmyloidCSTB protein, humanCystatin BProlineAmyloid fibrilsconformational diseasecystatinsdomain-swapped dimerproline mutantsproline switchprotein aggregationprotein foldingproteinopathiesthe kinetics of amyloid fibril formation

Identifiers

PMID30924329
PMCPMC6727212
OpenAlexW2929649516

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.