Evidence map›Paper›PMID 30923320›Full record

ArticleScientific reports2019

The genome of the arapaima (Arapaima gigas) provides insights into gigantism, fast growth and chromosomal sex determination system.

Kang Du, Sven Wuertz, Mateus Adolfi, Susanne Kneitz, Matthias Stöck, Marcos Oliveira, Rafael Nóbrega, Jenny Ormanns, Werner Kloas, Romain Feron and 8 more

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Kang DuUniversity of Wuerzburg, Physiological Chemistry, Biocenter, 97074, Wuerzburg, Germany.ORCID http://orcid.org/0000-0002-1497-8945
Sven WuertzLeibniz-Institute of Freshwater Ecology and Inland Fisheries, IGB, Müggelseedamm 301, D-12587, Berlin, Germany.
Mateus AdolfiUniversity of Wuerzburg, Physiological Chemistry, Biocenter, 97074, Wuerzburg, Germany.
Susanne KneitzUniversity of Wuerzburg, Physiological Chemistry, Biocenter, 97074, Wuerzburg, Germany.
Matthias StöckLeibniz-Institute of Freshwater Ecology and Inland Fisheries, IGB, Müggelseedamm 301, D-12587, Berlin, Germany.ORCID http://orcid.org/0000-0003-4888-8371
Marcos OliveiraUniversity of Wuerzburg, Physiological Chemistry, Biocenter, 97074, Wuerzburg, Germany.
Rafael NóbregaReproductive and Molecular Biology Group, Departament of Morphology, Institute of Biosciences, UNESP, Botucatu, Brazil.
Jenny OrmannsUniversity of Wuerzburg, Physiological Chemistry, Biocenter, 97074, Wuerzburg, Germany.
Werner KloasLeibniz-Institute of Freshwater Ecology and Inland Fisheries, IGB, Müggelseedamm 301, D-12587, Berlin, Germany.
Romain FeronINRA, UR1037 LPGP, Fish Physiology and Genomics, F-35042, Rennes, France.
Christophe KloppMIAT INRA Toulouse, CS 52627, 31326, Castanet-Tolosan, France.ORCID http://orcid.org/0000-0001-7126-5477
Hugues ParrinelloMontpellier GenomiX (MGX), c/o Institut de Génomique Fonctionnelle, 141 rue de la cardonille, 34094, Montpellier Cedex 05, France.
Laurent JournotMontpellier GenomiX (MGX), c/o Institut de Génomique Fonctionnelle, 141 rue de la cardonille, 34094, Montpellier Cedex 05, France.
Shunping HeKey Laboratory of Aquatic Biodiversity and Conservation of the Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, Hubei, 430072, China.ORCID http://orcid.org/0000-0001-9087-7890
John PostlethwaitInstitute of Neuroscience, University of Oregon, Eugene, Oregon, OR, 97401, USA.ORCID http://orcid.org/0000-0002-5476-2137
Axel MeyerLehrstuhl für Zoologie und Evolutionsbiologie, Department of Biology, University of Konstanz, Universitätstraße 10, 78457, Konstanz, Germany.
Yann GuiguenINRA, UR1037 LPGP, Fish Physiology and Genomics, F-35042, Rennes, France.
Manfred SchartlUniversity of Wuerzburg, Physiological Chemistry, Biocenter, 97074, Wuerzburg, Germany. phch1@biozentrum.uni-wuerzburg.de.ORCID http://orcid.org/0000-0001-9882-5948

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have sequenced the genome of the largest freshwater fish species of the world, the arapaima. Analysis of gene family dynamics and signatures of positive selection identified genes involved in the specific adaptations and unique features of this iconic species, in particular it's large size and fast growth. Genome sequences from both sexes combined with RAD-tag analyses from other males and females led to the isolation of male-specific scaffolds and supports an XY sex determination system in arapaima. Whole transcriptome sequencing showed that the product of the gland-like secretory organ on the head surface of males and females may not only provide nutritional fluid for sex-unbiased parental care, but that the organ itself has a more specific function in males, which engage more in parental care.

Indexed as

GenomeAnimalsBehavior, AnimalFemaleFishesFresh WaterGigantismMaleMolecular Sequence AnnotationSex Determination ProcessesTranscriptomeWhole Genome Sequencing

Identifiers

PMID30923320
PMCPMC6439221

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.