ArticleThe Plant cell2019
Dynamics of Gene Expression in Single Root Cells of
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Article in The Plant cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 208 papers.
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208citing papers in PubMed
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Who cites it
208 citing papers in PubMed.
- Single-Cell Insights into Medicinal Plant Development and Metabolism.Plants (Basel, Switzerland) · 2026Review
- Decoding the landscape of cell-type-specific co-expressed transcription factors in soybean.Nature plants · 2026Article
- Advances in single-cell and spatial multi-omics for plant development and stress responses.Plant diversity · 2026Review
- RGF signaling bridges root development and nonlethal thermal stress adaptation.The New phytologist · 2026Article
- Structural Variation and Its Roles in Plant Genomes.Plants (Basel, Switzerland) · 2026Review
- Longitudinal zone- and cell type-specific pattern-triggered immune responses in Arabidopsis roots.Developmental cell · 2026Article
- Single-Cell and Spatial Omics Technologies in Rice Abiotic Stress Biology: A Methodological Review.International journal of molecular sciences · 2026Review
- Cross-stage single-cell and spatial metabolome analyses reveal periderm specialization and tanshinone biosynthesis in Salvia miltiorrhiza roots.The New phytologist · 2026Article
- Single-cell insights into plant growth, adaptation, and evolution.Journal of integrative plant biology · 2026Review
- GhNAC47 activates GhSKS6-mediated cell wall remodeling to promote cotton chemical defoliation.The New phytologist · 2026Article
- Integrated signaling mechanisms governing root hair growth via transcriptional master regulators.The Plant journal : for cell and molecular biology · 2026Review
- Omics-driven plant breeding through phenomics-enviromics crosstalk.Nature communications · 2026Review
- Benchmarking plant single cell RNA-sequencing sample processing strategies.The EMBO journal · 2026Article
- SIZ1-mediated SUMOylation of HAT1 enhances plant thermotolerance in Arabidopsis.The Plant journal : for cell and molecular biology · 2026Article
- Harnessing genomics and transcriptomics to explore the genetic and molecular basis of abiotic stress tolerance in minor millets - a comprehensive review.Functional & integrative genomics · 2026Review
- Single-cell RNA-sequencing profiles reveal the developmental landscape of hawthorn leaves.BMC plant biology · 2026Article
- Evolutionary diversity of cell-type-specific expression and stress response in Brassicaceae roots.Nature communications · 2026Article
- Evolutionary diversity of cell-type-specific expression and stress response in Brassicaceae roots.bioRxiv : the preprint server for biology · 2026Article
- Research on Bamboo Shoot Bud Development: A Leap from Tissue Heterogeneity to Single-Cell Spatial Atlas.Plants (Basel, Switzerland) · 2026Review
- Artificial soil (ArtSoil): Recreating soil conditions in synthetic plant growth media.The Plant journal : for cell and molecular biology · 2026Article
148 more citing papers are in PubMed but not listed here.
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Authors and funding
10 authors.
Ken Jean-BaptisteDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195.ORCID 0000-0001-5768-5993
José L McFaline-FigueroaDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195.ORCID 0000-0003-4387-1511
Cristina M AlexandreDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195.ORCID 0000-0003-0047-0312
Michael W DorrityDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195.ORCID 0000-0002-7691-6504
Lauren SaundersDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195.ORCID 0000-0003-4377-4252
Kerry L BubbDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195.ORCID 0000-0002-1117-2591
Cole TrapnellDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195.ORCID 0000-0002-8105-4347
Stanley FieldsDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195.ORCID 0000-0001-5504-5925
Christine QueitschDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195.ORCID 0000-0002-0905-4705
Josh T CuperusDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195 cuperusj@uw.edu queitsch@uw.edu.ORCID 0000-0002-8019-7733
Funding
University of Washington Center for Nuclear Organization and FunctionU54DK107979 · NIDDK · UNIVERSITY OF WASHINGTON · PI NOBLE, WILLIAM STAFFORD, SHENDURE, JAY ASHOK · 2015 to 2019
$11.8MCARDIOVASCULAR RESEARCH TRAINING PROGRAMT32HL007828 · NHLBI · UNIVERSITY OF WASHINGTON · PI Francis Kim, Farid Moussavi-Harami · 1997 to 2026
$10.2MPulmonary Macrophage Transplantation for Pulmonary Alveolar ProteinosisR01HL118342 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI TRAPNELL, BRUCE C, TRAPNELL, BRUCE COLSTON · 2014 to 2021
$4.5MUnderstanding gene regulation in contextR35GM139532 · NIGMS · UNIVERSITY OF WASHINGTON · PI Christine Queitsch · 2021 to 2026
$3.3MNiche signals in HSC genesisRC2DK114777 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BERNSTEIN, IRWIN D, RAFII, SHAHIN · 2017 to 2021
$3.3MCharting the regulatory topography of the cell differentiation landscape with single-cell RNA-Seq.DP2HD088158 · NICHD · UNIVERSITY OF WASHINGTON · PI TRAPNELL, BRUCE COLSTON · 2015 to 2015
$2.3MUniversity of Washington PhD Training in Big Data for Genomics and NeuroscienceT32LM012419 · NLM · UNIVERSITY OF WASHINGTON · PI DANIEL, THOMAS L., FAIRHALL, ADRIENNE L · 2016 to 2019
$1.1MNHLBI NIH HHS R01 HL118342NHLBI NIH HHS T32 HL007828NICHD NIH HHS DP2 HD088158NIDDK NIH HHS RC2 DK114777NIDDK NIH HHS U54 DK107979NIGMS NIH HHS R35 GM139532NLM NIH HHS T32 LM012419
Abstract
Single cell RNA sequencing can yield high-resolution cell-type-specific expression signatures that reveal new cell types and the developmental trajectories of cell lineages. Here, we apply this approach to Arabidopsis (
Indexed as
Gene Expression Regulation, PlantTranscriptomeArabidopsisArabidopsis ProteinsGene Expression ProfilingHeat-Shock ResponsePlant RootsSequence Analysis, RNASingle-Cell AnalysisStress, PhysiologicalTranscription FactorsArabidopsis ProteinsTranscription Factors
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Read underepoch 390
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.