Evidence map›Paper›PMID 30922922›Full record

ArticleExperimental cell research2019

Metabolic switching in pluripotent stem cells reorganizes energy metabolism and subcellular organelles.

Carla O'Reilly, Ji-Hoon Cho, Qian Qi, Jennifer L Peters, Yu Fukuda, Sharon Frase, Junmin Peng, John D Schuetz, Yong Cheng, Sang-Oh Yoon and 1 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Experimental cell research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. The primitive growth factor NME7Biochemistry and biophysics reports · 2019
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Carla O'ReillyDepartment of Hematology, St. Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, TN, 38105, USA.
Ji-Hoon ChoDepartment of Structural Biology and Developmental Neurobiology, Center for Proteomics and Metabolomics, St. Jude Children's Research Hospital, Memphis, TN, USA.
Qian QiDepartment of Hematology, St. Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, TN, 38105, USA.
Jennifer L PetersCell and Tissue Imaging Center, St. Jude Children's Research Hospital, Memphis, TN, USA.
Yu FukudaDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN, USA.
Sharon FraseCell and Tissue Imaging Center, St. Jude Children's Research Hospital, Memphis, TN, USA.
Junmin PengDepartment of Structural Biology and Developmental Neurobiology, Center for Proteomics and Metabolomics, St. Jude Children's Research Hospital, Memphis, TN, USA.
John D SchuetzDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN, USA.
Yong ChengDepartment of Hematology, St. Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, TN, 38105, USA.
Sang-Oh YoonDepartment of Cancer Biology and Pharmacology, University of Illinois College of Medicine, 1 Illini Dr. Peoria, IL, 61605, USA. Electronic address: syoon1@uic.edu.
Min-Joon HanDepartment of Hematology, St. Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, TN, 38105, USA. Electronic address: Min-Joon.Han@stjude.org.
St. Jude Children's Research Hospital · USIllinois College · USImaging Center · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
Transporters and MedulloblastomaR01CA194057 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI SCHUETZ, JOHN D · 2015 to 2025
$4.0M
Transporters and hematopoietic toxicityR01CA194206 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI SCHUETZ, JOHN D · 2016 to 2020
$2.4M
Multi-level Integrative Proteomics to Alzheimer's Disease PathwaysR01AG053987 · NIA · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI PENG, JUNMIN · 2016 to 2020
$2.2M
NCI NIH HHS P30 CA021765NCI NIH HHS R01 CA194057NCI NIH HHS R01 CA194206NIA NIH HHS R01 AG053987
6 · The paper itself

Abstract

Metabolic studies of human pluripotent stem cells (hPSCs) have focused on how the cells produce energy through the catabolic pathway. The less-studied anabolic pathway, by which hPSCs expend energy in the form of adenosine triphosphate (ATP), is not yet fully understood. Compared to fully differentiated somatic cells, hPSCs undergo significant changes not only in their gene expression but also in their production and/or expenditure of ATP. Here, we investigate how hPSCs tightly control their energy homeostasis by studying the main energy-consuming process, mRNA translation. In addition, change of subcellular organelles regarding energy homeostasis has been investigated. Lysosomes are organelles that play an important role in the elimination of unnecessary cellular materials by digestion and in the recycling system of the cell. We have found that hPSCs control their lysosome numbers in part by regulating lysosomal gene/protein expression. Thus, because the levels of mRNA translation rate are lower in hPSCs than in somatic cells, not only the global translational machinery but also the lysosomal recycling machinery is suppressed in hPSCs. Overall, the results of our study suggest that hPSCs reprogram gene expression and signaling to regulate energy-consuming processes and energy-controlling organelles.

Indexed as

Adenosine TriphosphateCell DifferentiationCells, CulturedEnergy MetabolismGene ExpressionHomeostasisHumansLysosomesOrganellesPluripotent Stem CellsProtein BiosynthesisRNA, MessengerSignal TransductionAdenosine TriphosphateRNA, MessengerLysosomeMitochondrialPluripotent stem cellTranslation

Identifiers

PMID30922922
PMCPMC8552344
OpenAlexW2934775252

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.