Evidence map›Paper›PMID 30919152›Full record

ArticlePlant molecular biology2019

Generation of a selectable marker free, highly expressed single copy locus as landing pad for transgene stacking in sugarcane.

Yang Zhao, Jae Y Kim, Ratna Karan, Je H Jung, Bhuvan Pathak, Bruce Williamson, Baskaran Kannan, Duoduo Wang, Chunyang Fan, Wenjin Yu and 3 more

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Expression ofInternational journal of molecular sciences · 2022
    Article
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Yang ZhaoAgronomy Department, Plant Molecular and Cellular Biology Program, Genetics Institute, University of Florida - IFAS, Gainesville, FL, 32611, USA.
Jae Y KimAgronomy Department, Plant Molecular and Cellular Biology Program, Genetics Institute, University of Florida - IFAS, Gainesville, FL, 32611, USA.
Ratna KaranAgronomy Department, Plant Molecular and Cellular Biology Program, Genetics Institute, University of Florida - IFAS, Gainesville, FL, 32611, USA.
Je H JungAgronomy Department, Plant Molecular and Cellular Biology Program, Genetics Institute, University of Florida - IFAS, Gainesville, FL, 32611, USA.
Bhuvan PathakAgronomy Department, Plant Molecular and Cellular Biology Program, Genetics Institute, University of Florida - IFAS, Gainesville, FL, 32611, USA.
Bruce WilliamsonAgronomy Department, Plant Molecular and Cellular Biology Program, Genetics Institute, University of Florida - IFAS, Gainesville, FL, 32611, USA.
Baskaran KannanAgronomy Department, Plant Molecular and Cellular Biology Program, Genetics Institute, University of Florida - IFAS, Gainesville, FL, 32611, USA.
Duoduo WangAgronomy Department, Plant Molecular and Cellular Biology Program, Genetics Institute, University of Florida - IFAS, Gainesville, FL, 32611, USA.
Chunyang FanSyngenta Crop Protection, LLC, Research Triangle Park, NC, 27709, USA.
Wenjin YuSyngenta Crop Protection, LLC, Research Triangle Park, NC, 27709, USA.
Shujie DongSyngenta Crop Protection, LLC, Research Triangle Park, NC, 27709, USA.
Vibha SrivastavaCrop, Soil and Environmental Sciences, University of Arkansas, Fayetteville, AR, 72701, USA.
Fredy AltpeterAgronomy Department, Plant Molecular and Cellular Biology Program, Genetics Institute, University of Florida - IFAS, Gainesville, FL, 32611, USA. altpeter@ufl.edu.ORCID http://orcid.org/0000-0002-0894-4976
University of Florida · USSyngenta (United States) · USKongju National University · KRUniversity of Arkansas at Fayetteville · US

Funding

CPBR 00108472Office of Science DE-SC0018420Syngenta Crop Protection, LLC. 00108472
6 · The paper itself

Abstract

key messageA selectable marker free, highly expressed single copy locus flanked by insulators was created as landing pad for transgene stacking in sugarcane. These events displayed superior transgene expression compared to single-copy transgenic lines lacking insulators. Excision of the selectable marker gene from transgenic sugarcane lines was supported by FLPe/FRT site-specific recombination. Sugarcane, a tropical C4 grass in the genus Saccharum (Poaceae), accounts for nearly 80% of sugar produced worldwide and is also an important feedstock for biofuel production. Generating transgenic sugarcane with predictable and stable transgene expression is critical for crop improvement. In this study, we generated a highly expressed single copy locus as landing pad for transgene stacking. Transgenic sugarcane lines with stable integration of a single copy nptII expression cassette flanked by insulators supported higher transgene expression along with reduced line to line variation when compared to single copy events without insulators by NPTII ELISA analysis. Subsequently, the nptII selectable marker gene was efficiently excised from the sugarcane genome by the FLPe/FRT site-specific recombination system to create selectable marker free plants. This study provides valuable resources for future gene stacking using site-specific recombination or genome editing tools.

Indexed as

Genome, PlantRecombination, GeneticBiofuelsCell Culture TechniquesCell LineGene EditingGene Expression Regulation, PlantGenes, PlantGenetic MarkersKanamycin KinasePlant ProteinsPlants, Genetically ModifiedSaccharumBiofuelsGenetic MarkersKanamycin KinasePlant ProteinsFLPFLPeInsulatorSelection marker removalSite-specific recombinationSugarcane

Identifiers

PMID30919152
OpenAlexW2925248913

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.