Evidence map›Paper›PMID 30918070›Full record

ArticleJournal of virology2019

Identification and Characterization of a Human Coronavirus 229E Nonstructural Protein 8-Associated RNA 3'-Terminal Adenylyltransferase Activity.

Jana Tvarogová, Ramakanth Madhugiri, Ganesh Bylapudi, Lyndsey J Ferguson, Nadja Karl, John Ziebuhr

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
9.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 68 citations in OpenAlex.

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  13. Review
  14. Pathomechanisms, therapeutic targets and potent inhibitors of some beta-coronaviruses from bench-to-bedside.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2021
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  20. Hallmarks ofScience advances · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Jana Tvarogová *Institute of Medical Virology, Justus Liebig University Giessen, Giessen, Germany.
Ramakanth Madhugiri *Institute of Medical Virology, Justus Liebig University Giessen, Giessen, Germany.
Ganesh BylapudiInstitute of Medical Virology, Justus Liebig University Giessen, Giessen, Germany.
Lyndsey J FergusonCentre for Infection and Immunity, School of Medicine, Dentistry and Biomedical Sciences, Queen's University Belfast, Belfast, United Kingdom.
Nadja KarlInstitute of Medical Virology, Justus Liebig University Giessen, Giessen, Germany.
John ZiebuhrInstitute of Medical Virology, Justus Liebig University Giessen, Giessen, Germany john.ziebuhr@viro.med.uni-giessen.de.
University of Giessen · DEQueen's University Belfast · GB

Funding

Biotechnology and Biological Sciences Research Council BB/G012067/1
6 · The paper itself

Abstract

Coronavirus nonstructural protein 8 (nsp8) has been suggested to have diverse activities, including noncanonical template-dependent polymerase activities. Here, we characterized a recombinant form of the human coronavirus 229E (HCoV-229E) nsp8 and found that the protein has metal ion-dependent RNA 3'-terminal adenylyltransferase (TATase) activity, while other nucleotides were not (or very inefficiently) transferred to the 3' ends of single-stranded and (fully) double-stranded acceptor RNAs. Using partially double-stranded RNAs, very efficient TATase activity was observed if the opposite (template) strand contained a short 5' oligo(U) sequence, while very little (if any) activity was detected for substrates with other homopolymeric or heteropolymeric sequences in the 5' overhang. The oligo(U)-assisted/templated TATase activity on partial-duplex RNAs was confirmed for two other coronavirus nsp8 proteins, suggesting that the activity is conserved among coronaviruses. Replacement of a conserved Lys residue with Ala abolished the

Indexed as

Amino Acid SequenceCoronavirusCoronavirus 229E, HumanCoronavirus InfectionsCoronavirus RNA-Dependent RNA PolymeraseNucleotidesPolynucleotide AdenylyltransferaseProtein MultimerizationRNA-Dependent RNA PolymeraseRNA, Double-StrandedRNA, ViralViral Nonstructural ProteinsVirus ReplicationCoronavirus RNA-Dependent RNA Polymerasenonstructural protein, coronavirusNS8 protein, SARS-CoV-2NucleotidesPolynucleotide AdenylyltransferaseRNA-Dependent RNA PolymeraseRNA, Double-StrandedRNA, ViralViral Nonstructural ProteinscoronavirusreplicationRNA 3′-terminal adenylyltransferaseRNA virus

Identifiers

PMID30918070
PMCPMC6613758
OpenAlexW2924401396

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.