Evidence map›Paper›PMID 30917807›Full record

ArticleBMC structural biology2019

Effect of low complexity regions within the PvMSP3α block II on the tertiary structure of the protein and implications to immune escape mechanisms.

Alebachew Messele Kebede, Fitsum Girma Tadesse, Adey Desta Feleke, Lemu Golassa, Endalamaw Gadisa

Open access · hybridAbstract read
In one paragraph

Article in BMC structural biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Alebachew Messele KebedeInstitute of Biotechnology, Addis Ababa University, Addis Ababa, Ethiopia. alebachew.messele@aau.edu.et.
Fitsum Girma TadesseInstitute of Biotechnology, Addis Ababa University, Addis Ababa, Ethiopia.
Adey Desta FelekeInstitute of Biotechnology, Addis Ababa University, Addis Ababa, Ethiopia.
Lemu GolassaAklilu Lemma Institute of Pathobiology, Addis Ababa University, Addis Ababa, Ethiopia.
Endalamaw GadisaArmauer Hansen Research Institute (AHRI), Addis Ababa, Ethiopia.
Addis Ababa University · ETArmauer Hansen Research Institute · ETRadboud University Nijmegen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPlasmodium vivax merozoite surface protein 3α (PvMSP3α) is a promising vaccine candidate which has shown strong association with immunogenicity and protectiveness. Its use is however complicated by evolutionary plasticity features which enhance immune evasion. Low complexity regions (LCRs) provide plasticity in surface proteins of Plasmodium species, but its implication in vaccine design remain unexplored. Here population genetic, comparative phylogenetic and structural biology analysis was performed on the gene encoding PvMSP3α.

resultsThree LCRs were found in PvMSP3α block II. Both the predicted tertiary structure of the protein and the phylogenetic trees based on this region were influenced by the presence of the LCRs. The LCRs were mainly B cell epitopes within or adjacent. In addition a repeat motif mimicking one of the B cell epitopes was found within the PvMSP3a block II low complexity region. This particular B cell epitope also featured rampant alanine substitutions which might impair antibody binding.

conclusionThe findings indicate that PvMSP3α block II possesses LCRs which might confer a strong phenotypic plasticity. The phenomenon of phenotypic plasticity and implication of LCRs in malaria immunology in general and vaccine candidate genes in particular merits further exploration.

Indexed as

Amino Acid SubstitutionAntigens, ProtozoanEpitopes, B-LymphocyteEthiopiaHumansImmune EvasionMalaria, VivaxModels, MolecularPhylogenyPlasmodium vivaxPolymorphism, GeneticProtein DomainsProtein Structure, TertiaryProtozoan ProteinsAntigens, ProtozoanEpitopes, B-Lymphocytemerozoite surface protein 3, PlasmodiumProtozoan ProteinsAntigenic diversityImmune evasionLow complexity regionsVaccine design

Identifiers

PMID30917807
PMCPMC6437935
OpenAlexW2946250110

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.