Evidence map›Paper›PMID 30917160›Full record

ArticlePloS one2019

Osmotic stress activates nif and fix genes and induces the Rhizobium tropici CIAT 899 Nod factor production via NodD2 by up-regulation of the nodA2 operon and the nodA3 gene.

Pablo Del Cerro, Manuel Megías, Francisco Javier López-Baena, Antonio Gil-Serrano, Francisco Pérez-Montaño, Francisco Javier Ollero

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
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  6. Marker trait association for biological nitrogen fixation traits in an interspecific cross of chickpea (Physiology and molecular biology of plants : an international journal of functional plant biology · 2023
    Article
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  16. OnfD, an AraC-Type Transcriptional Regulator Encoded byApplied and environmental microbiology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Pablo Del CerroDepartamento de Microbiología, Facultad de Biología, Universidad de Sevilla, Sevilla, Spain.ORCID 0000-0002-8030-7226
Manuel MegíasDepartamento de Microbiología, Facultad de Biología, Universidad de Sevilla, Sevilla, Spain.
Francisco Javier López-BaenaDepartamento de Microbiología, Facultad de Biología, Universidad de Sevilla, Sevilla, Spain.
Antonio Gil-SerranoDepartamento de Química Orgánica, Facultad de Química, Universidad de Sevilla, Sevilla, Spain.
Francisco Pérez-MontañoDepartamento de Microbiología, Facultad de Biología, Universidad de Sevilla, Sevilla, Spain.
Francisco Javier OlleroDepartamento de Microbiología, Facultad de Biología, Universidad de Sevilla, Sevilla, Spain.ORCID 0000-0002-3641-7946
Universidad de Sevilla · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The symbiosis between rhizobia and legumes is characterized by a complex molecular dialogue in which the bacterial NodD protein plays a major role due to its capacity to activate the expression of the nodulation genes in the presence of appropiate flavonoids. These genes are involved in the synthesis of molecules, the nodulation factors (NF), responsible for launching the nodulation process. Rhizobium tropici CIAT 899, a rhizobial strain that nodulates Phaseolus vulgaris, is characterized by its tolerance to multiple environmental stresses such as high temperatures, acidity or elevated osmolarity. This strain produces nodulation factors under saline stress and the same set of CIAT 899 nodulation genes activated by inducing flavonoids are also up-regulated in a process controlled by the NodD2 protein. In this paper, we have studied the effect of osmotic stress (high mannitol concentrations) on the R. tropici CIAT 899 transcriptomic response. In the same manner as with saline stress, the osmotic stress mediated NF production and export was controlled directly by NodD2. In contrast to previous reports, the nodA2FE operon and the nodA3 and nodD1 genes were up-regulated with mannitol, which correlated with an increase in the production of biologically active NF. Interestingly, in these conditions, this regulatory protein controlled not only the expression of nodulation genes but also the expression of other genes involved in protein folding and synthesis, motility, synthesis of polysaccharides and, surprinsingly, nitrogen fixation. Moreover, the non-metabolizable sugar dulcitol was also able to induce the NF production and the activation of nod genes in CIAT 899.

Indexed as

Gene Expression Regulation, BacterialOperonOsmotic PressureBacterial ProteinsDiuretics, OsmoticHigh-Throughput Nucleotide SequencingMannitolRhizobium tropiciTranscriptional ActivationBacterial ProteinsDiuretics, OsmoticMannitol

Identifiers

PMID30917160
PMCPMC6436695
OpenAlexW2923729367

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.