Evidence map›Paper›PMID 30917129›Full record

ArticlePLoS genetics2019

Intercellular communication is required for trap formation in the nematode-trapping fungus Duddingtonia flagrans.

Loubna Youssar, Valentin Wernet, Nicole Hensel, Xi Yu, Heinz-Georg Hildebrand, Birgit Schreckenberger, Marius Kriegler, Birgit Hetzer, Phillip Frankino, Andrew Dillin and 1 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
11.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 78 citations in OpenAlex.

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  12. STRIPAK, a fundamental signaling hub of eukaryotic development.Microbiology and molecular biology reviews : MMBR · 2024
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  17. iScience · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Loubna YoussarDepartment of Microbiology, Karlsruhe Institute of Technology (KIT)-South Campus, Institute for Applied Biosciences, Karlsruhe, Germany.
Valentin WernetDepartment of Microbiology, Karlsruhe Institute of Technology (KIT)-South Campus, Institute for Applied Biosciences, Karlsruhe, Germany.
Nicole HenselDepartment of Microbiology, Karlsruhe Institute of Technology (KIT)-South Campus, Institute for Applied Biosciences, Karlsruhe, Germany.
Xi YuDepartment of Microbiology, Karlsruhe Institute of Technology (KIT)-South Campus, Institute for Applied Biosciences, Karlsruhe, Germany.
Heinz-Georg HildebrandDepartment of Microbiology, Karlsruhe Institute of Technology (KIT)-South Campus, Institute for Applied Biosciences, Karlsruhe, Germany.ORCID 0000-0002-4501-636X
Birgit SchreckenbergerDepartment of Microbiology, Karlsruhe Institute of Technology (KIT)-South Campus, Institute for Applied Biosciences, Karlsruhe, Germany.
Marius KrieglerDepartment of Microbiology, Karlsruhe Institute of Technology (KIT)-South Campus, Institute for Applied Biosciences, Karlsruhe, Germany.
Birgit HetzerMax Rubner Institute, Karlsruhe, Germany.ORCID 0000-0001-8471-5748
Phillip FrankinoDepartment of Molecular and Cell Biology, Howard Hughes Medical Institute, University of Berkeley, Berkeley, California, United States of America.
Andrew DillinDepartment of Molecular and Cell Biology, Howard Hughes Medical Institute, University of Berkeley, Berkeley, California, United States of America.
Reinhard FischerDepartment of Microbiology, Karlsruhe Institute of Technology (KIT)-South Campus, Institute for Applied Biosciences, Karlsruhe, Germany.ORCID 0000-0002-6704-2569
Karlsruhe Institute of Technology · DEHoward Hughes Medical Institute · USMax Rubner Institut · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nematode-trapping fungi (NTF) are a large and diverse group of fungi, which may switch from a saprotrophic to a predatory lifestyle if nematodes are present. Different fungi have developed different trapping devices, ranging from adhesive cells to constricting rings. After trapping, fungal hyphae penetrate the worm, secrete lytic enzymes and form a hyphal network inside the body. We sequenced the genome of Duddingtonia flagrans, a biotechnologically important NTF used to control nematode populations in fields. The 36.64 Mb genome encodes 9,927 putative proteins, among which are more than 638 predicted secreted proteins. Most secreted proteins are lytic enzymes, but more than 200 were classified as small secreted proteins (< 300 amino acids). 117 putative effector proteins were predicted, suggesting interkingdom communication during the colonization. As a first step to analyze the function of such proteins or other phenomena at the molecular level, we developed a transformation system, established the fluorescent proteins GFP and mCherry, adapted an assay to monitor protein secretion, and established gene-deletion protocols using homologous recombination or CRISPR/Cas9. One putative virulence effector protein, PefB, was transcriptionally induced during the interaction. We show that the mature protein is able to be imported into nuclei in Caenorhabditis elegans cells. In addition, we studied trap formation and show that cell-to-cell communication is required for ring closure. The availability of the genome sequence and the establishment of many molecular tools will open new avenues to studying this biotechnologically relevant nematode-trapping fungus.

Indexed as

AnimalsCaenorhabditis elegansCell CommunicationDuddingtoniaHost-Pathogen InteractionsIntercellular Signaling Peptides and ProteinsNematodaVirulenceIntercellular Signaling Peptides and Proteins

Identifiers

PMID30917129
PMCPMC6453484
OpenAlexW2924349629

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.