Evidence map›Paper›PMID 30916349›Full record

ArticleNucleic acids research2019

Kti12, a PSTK-like tRNA dependent ATPase essential for tRNA modification by Elongator.

Rościsław Krutyhołowa, Alexander Hammermeister, Rene Zabel, Wael Abdel-Fattah, Annekathrin Reinhardt-Tews, Mark Helm, Michael J R Stark, Karin D Breunig, Raffael Schaffrath, Sebastian Glatt

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  8. Yeast geneMicrobial cell (Graz, Austria) · 2023
    Article
  9. The life and times of a tRNA.RNA (New York, N.Y.) · 2023
    Review
  10. Article
  11. Article
  12. Article
  13. AtELP4 a subunit of the Elongator complex inFrontiers in plant science · 2022
    Article
  14. How Elongator Acetylates tRNA Bases.International journal of molecular sciences · 2020
    Review
  15. Review
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Rościsław KrutyhołowaMax Planck Research Group at the Malopolska Centre of Biotechnology, Jagiellonian University, Krakow, Poland.
Alexander HammermeisterInstitut für Biologie, FG Mikrobiologie, Universität Kassel, Kassel, Germany.
Rene ZabelInstitut für Biologie, Martin-Luther-Universität Halle-Wittenberg, Halle (Saale), Germany.
Wael Abdel-FattahInstitut für Biologie, FG Mikrobiologie, Universität Kassel, Kassel, Germany.
Annekathrin Reinhardt-TewsInstitut für Biologie, Martin-Luther-Universität Halle-Wittenberg, Halle (Saale), Germany.
Mark HelmInstitut für Pharmazie und Biochemie, Universität Mainz, Mainz, Germany.
Michael J R StarkCentre for Gene Regulation & Expression, University of Dundee, Dundee, UK.
Karin D BreunigInstitut für Biologie, Martin-Luther-Universität Halle-Wittenberg, Halle (Saale), Germany.
Raffael SchaffrathInstitut für Biologie, FG Mikrobiologie, Universität Kassel, Kassel, Germany.
Sebastian GlattMax Planck Research Group at the Malopolska Centre of Biotechnology, Jagiellonian University, Krakow, Poland.
Martin Luther University Halle-Wittenberg · DEUniversity of Kassel · DEJagiellonian University · PLJohannes Gutenberg University Mainz · DEUniversity of Dundee · GB

Funding

Biotechnology and Biological Sciences Research Council BB/F019106/1
6 · The paper itself

Abstract

Posttranscriptional RNA modifications occur in all domains of life. Modifications of anticodon bases are of particular importance for ribosomal decoding and proteome homeostasis. The Elongator complex modifies uridines in the wobble position and is highly conserved in eukaryotes. Despite recent insights into Elongator's architecture, the structure and function of its regulatory factor Kti12 have remained elusive. Here, we present the crystal structure of Kti12's nucleotide hydrolase domain trapped in a transition state of ATP hydrolysis. The structure reveals striking similarities to an O-phosphoseryl-tRNA kinase involved in the selenocysteine pathway. Both proteins employ similar mechanisms of tRNA binding and show tRNASec-dependent ATPase activity. In addition, we demonstrate that Kti12 binds directly to Elongator and that ATP hydrolysis is crucial for Elongator to maintain proper tRNA anticodon modification levels in vivo. In summary, our data reveal a hitherto uncharacterized link between two translational control pathways that regulate selenocysteine incorporation and affect ribosomal tRNA selection via specific tRNA modifications.

Indexed as

Adaptor Proteins, Signal TransducingAdenosine TriphosphatasesAnticodonCarrier ProteinsChaetomiumCrystallography, X-RayProtein ConformationRibosomesRNA Processing, Post-TranscriptionalRNA, TransferSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsUridineAdaptor Proteins, Signal TransducingAdenosine TriphosphatasesAnticodonCarrier ProteinsKTI12 protein, S cerevisiaeRNA, TransferSaccharomyces cerevisiae ProteinsUridine

Identifiers

PMID30916349
PMCPMC6511879
OpenAlexW2925223859

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.