Evidence map›Paper›PMID 30916331›Full record

ArticleNucleic acids research2019

A 5'-to-3' strand exchange polarity is intrinsic to RecA nucleoprotein filaments in the absence of ATP hydrolysis.

Yu-Hsuan Lin, Chia-Chieh Chu, Hsiu-Fang Fan, Pang-Yen Wang, Michael M Cox, Hung-Wen Li

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

  1. NProceedings of the National Academy of Sciences of the United States of America · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Yu-Hsuan LinDepartment of Chemistry, National Taiwan University, 10617, Taiwan.
Chia-Chieh ChuDepartment of Chemistry, National Taiwan University, 10617, Taiwan.
Hsiu-Fang FanDepartment of Life Sciences and Institute of Genome Sciences, National Yang-Ming University, 11221 Taiwan.
Pang-Yen WangDepartment of Chemistry, National Taiwan University, 10617, Taiwan.
Michael M CoxDepartment of Biochemistry, University of Wisconsin, Madison, 53706, USA.
Hung-Wen LiDepartment of Chemistry, National Taiwan University, 10617, Taiwan.
National Taiwan University · TWNational Yang Ming Chiao Tung University · TWUniversity of Wisconsin–Madison · US

Funding

THE BIOCHEMISTRY OF GENETIC RECOMBINATION/RECA PROTEINR01GM032335 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI COX, MICHAEL M. · 1985 to 2014
$6.8M
Mechanisms and applications of recombinational DNA repairU01GM032335 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI COX, MICHAEL M. · 2015 to 2018
$1.7M
NIGMS NIH HHS R01 GM032335NIGMS NIH HHS U01 GM032335
6 · The paper itself

Abstract

RecA is essential to recombinational DNA repair in which RecA filaments mediate the homologous DNA pairing and strand exchange. Both RecA filament assembly and the subsequent DNA strand exchange are directional. Here, we demonstrate that the polarity of DNA strand exchange is embedded within RecA filaments even in the absence of ATP hydrolysis, at least over short DNA segments. Using single-molecule tethered particle motion, we show that successful strand exchange in the presence of ATP proceeds with a 5'-to-3' polarity, as demonstrated previously. RecA filaments prepared with ATPγS also exhibit a 5'-to-3' progress of strand exchange, suggesting that the polarity is not determined by RecA disassembly and/or ATP hydrolysis. RecAΔC17 mutants, lacking a C-terminal autoregulatory flap, also promote strand exchange in a 5'-to-3' polarity in ATPγS, a polarity that is largely lost with this RecA variant when ATP is hydrolyzed. We propose that there is an inherent strand exchange polarity mediated by the structure of the RecA filament groove, associated by conformation changes propagated in a polar manner as DNA is progressively exchanged. ATP hydrolysis is coupled to polar strand exchange over longer distances, and its contribution to the polarity requires an intact RecA C-terminus.

Indexed as

Adenosine TriphosphateDNA, BacterialDNA-Binding ProteinsDNA, Single-StrandedEscherichia coliEscherichia coli ProteinsHydrolysisIonsKineticsMagnesiumNucleoproteinsProtein DomainsRec A Recombinasesadenosine 5'-O-(3-thiotriphosphate)Adenosine TriphosphateDNA, BacterialDNA-Binding ProteinsDNA, Single-StrandedEscherichia coli ProteinsIonsMagnesiumNucleoproteinsrecA protein, E coliRec A Recombinases

Identifiers

PMID30916331
PMCPMC6547424
OpenAlexW2923277387

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.