Evidence map›Paper›PMID 30915502›Full record

ArticleApplied microbiology and biotechnology2019

Identification of genes involved in shea butter biosynthesis from Vitellaria paradoxa fruits through transcriptomics and functional heterologous expression.

Yongjun Wei, Boyang Ji, Verena Siewers, Deyang Xu, Barbara Ann Halkier, Jens Nielsen

Open access · hybridAbstract read
In one paragraph

Article in Applied microbiology and biotechnology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

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  14. Advances in Metabolic Engineering ofFrontiers in bioengineering and biotechnology · 2020
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  16. Recent Advances on Feasible Strategies for Monoterpenoid Production inFrontiers in bioengineering and biotechnology · 2020
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  17. The complete chloroplast genome sequence ofMitochondrial DNA. Part B, Resources · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Yongjun WeiSchool of Pharmaceutical Sciences, Key Laboratory of State Ministry of Education, Key Laboratory of Henan province for Drug Quality Control and Evaluation, Collaborative Innovation Center of New Drug Research and Safety Evaluation, Zhengzhou University, 100 Kexue Avenue, Zhengzhou, 450001, Henan, China.
Boyang JiDepartment of Biology and Biological Engineering, Chalmers University of Technology, SE-41296, Gothenburg, Sweden.
Verena SiewersDepartment of Biology and Biological Engineering, Chalmers University of Technology, SE-41296, Gothenburg, Sweden.
Deyang XuDynaMo Center, Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg C, Denmark.
Barbara Ann HalkierDynaMo Center, Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg C, Denmark.
Jens NielsenDepartment of Biology and Biological Engineering, Chalmers University of Technology, SE-41296, Gothenburg, Sweden. nielsenj@chalmers.se.
Chalmers University of Technology · SEUniversity of Copenhagen · DKNovo Nordisk Foundation · DK

Funding

National Natural Science Foundation of China 31800079the Knut and Alice Wallenberg Foundation Nonethe Novo Nordisk Foundation Nonethe Swedish Foundation for Strategic Research None
6 · The paper itself

Abstract

Shea tree (Vitellaria paradoxa) is one economically important plant species that mainly distributes in West Africa. Shea butter extracted from shea fruit kernels can be used as valuable products in the food and cosmetic industries. The most valuable composition in shea butter was one kind of triacylglycerol (TAG), 1,3-distearoyl-2-oleoyl-glycerol (SOS, C18:0-C18:1-C18:0). However, shea butter production is limited and little is known about the genetic information of shea tree. In this study, we tried to reveal genetic information of shea tree and identified shea TAG biosynthetic genes for future shea butter production in yeast cell factories. First, we measured lipid content, lipid composition, and TAG composition of seven shea fruits at different ripe stages. Then, we performed transcriptome analysis on two shea fruits containing obviously different levels of SOS and revealed a list of TAG biosynthetic genes potentially involved in TAG biosynthesis. In total, 4 glycerol-3-phosphate acyltransferase (GPAT) genes, 8 lysophospholipid acyltransferase (LPAT) genes, and 11 diacylglycerol acyltransferase (DGAT) genes in TAG biosynthetic pathway were predicted from the assembled transcriptome and 14 of them were cloned from shea fruit cDNA. Furthermore, the heterologous expression of these 14 potential GPAT, LPAT, and DGAT genes in Saccharomyces cerevisiae changed yeast fatty acid and lipid profiles, suggesting that they functioned in S. cerevisiae. Moreover, two shea DGAT genes, VpDGAT1 and VpDGAT7, were identified as functional DGATs in shea tree, showing they might be useful for shea butter (SOS) production in yeast cell factories.

Indexed as

Biosynthetic PathwaysDiacylglycerol O-AcyltransferaseFruitMetabolic EngineeringPlant ProteinsSaccharomyces cerevisiaeSapotaceaeTranscriptomeTriglyceridesYeastsDiacylglycerol O-AcyltransferasePlant ProteinsTriglyceridesShea butterShea transcriptomicSynthetic biologyTAG biosynthetic pathwayYeast cell factories

Identifiers

PMID30915502
PMCPMC6469615
OpenAlexW2924748723

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.