Evidence map›Paper›PMID 30915154›Full record

ArticleComputational and mathematical methods in medicine2019

Maximizing Interpretability and Cost-Effectiveness of Surgical Site Infection (SSI) Predictive Models Using Feature-Specific Regularized Logistic Regression on Preoperative Temporal Data.

Primoz Kocbek, Nino Fijacko, Cristina Soguero-Ruiz, Karl Øyvind Mikalsen, Uros Maver, Petra Povalej Brzan, Andraz Stozer, Robert Jenssen, Stein Olav Skrøvseth, Gregor Stiglic

Abstract read
In one paragraph

Article in Computational and mathematical methods in medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Risk Factors Analysis of Surgical Infection Using Artificial Intelligence: A Single Center Study.International journal of environmental research and public health · 2022
    Article
  6. Economic evaluations of big data analytics for clinical decision-making: a scoping review.Journal of the American Medical Informatics Association : JAMIA · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Primoz KocbekFaculty of Health Sciences, University of Maribor, Maribor 2000, Slovenia.ORCID 0000-0002-9064-5085
Nino FijackoFaculty of Health Sciences, University of Maribor, Maribor 2000, Slovenia.
Cristina Soguero-RuizDepartment of Signal Theory and Communications, Telematics and Computing, Universidad Rey Juan Carlos, Fuenlabrada 28943, Spain.
Karl Øyvind MikalsenUiT Machine Learning Group, UiT the Arctic University of Norway, Tromsø 9037, Norway.
Uros MaverFaculty of Medicine, University of Maribor, Maribor 2000, Slovenia.ORCID 0000-0002-2237-3786
Petra Povalej BrzanFaculty of Health Sciences, University of Maribor, Maribor 2000, Slovenia.ORCID 0000-0001-7872-586X
Andraz StozerFaculty of Medicine, University of Maribor, Maribor 2000, Slovenia.ORCID 0000-0003-2097-5502
Robert JenssenUiT Machine Learning Group, UiT the Arctic University of Norway, Tromsø 9037, Norway.
Stein Olav SkrøvsethDepartment of Mathematics and Statistics, UiT the Arctic University of Norway, Tromsø 9037, Norway.
Gregor StiglicFaculty of Health Sciences, University of Maribor, Maribor 2000, Slovenia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study describes a novel approach to solve the surgical site infection (SSI) classification problem. Feature engineering has traditionally been one of the most important steps in solving complex classification problems, especially in cases with temporal data. The described novel approach is based on abstraction of temporal data recorded in three temporal windows. Maximum likelihood L1-norm (lasso) regularization was used in penalized logistic regression to predict the onset of surgical site infection occurrence based on available patient blood testing results up to the day of surgery. Prior knowledge of predictors (blood tests) was integrated in the modelling by introduction of penalty factors depending on blood test prices and an early stopping parameter limiting the maximum number of selected features used in predictive modelling. Finally, solutions resulting in higher interpretability and cost-effectiveness were demonstrated. Using repeated holdout cross-validation, the baseline C-reactive protein (CRP) classifier achieved a mean AUC of 0.801, whereas our best full lasso model achieved a mean AUC of 0.956. Best model testing results were achieved for full lasso model with maximum number of features limited at 20 features with an AUC of 0.967. Presented models showed the potential to not only support domain experts in their decision making but could also prove invaluable for improvement in prediction of SSI occurrence, which may even help setting new guidelines in the field of preoperative SSI prevention and surveillance.

Indexed as

Cost-Benefit AnalysisAlgorithmsArea Under CurveC-Reactive ProteinData Interpretation, StatisticalDecision TreesFemaleGastrointestinal TractHumansLikelihood FunctionsLogistic ModelsMaleMedical InformaticsNorwayPreoperative PeriodRegression AnalysisC-Reactive Protein

Identifiers

PMID30915154
PMCPMC6399553

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.