Evidence map›Paper›PMID 30913250›Full record

Trial reportPloS one2019

Ultrasensitive detection of lipoarabinomannan with plasmonic grating biosensors in clinical samples of HIV negative patients with tuberculosis.

Aaron Wood, Syed Barizuddin, Charles M Darr, Cherian J Mathai, Alexey Ball, Kyle Minch, Akos Somoskovi, Beston Hamasur, John T Connelly, Bernhard Weigl and 5 more

Registry-linked trialOpen access · goldAbstract readClinical TrialMulticenter Study
In one paragraph

Trial report in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04923958 (Rapid Research in Diagnostics Development for TB Network), which is not on this map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04923958 narecruitingnot on this mapstarted 2021, after this paper: background citation

Rapid Research in Diagnostics Development for TB Network (R2D2 TB Network) Study

TypeinterventionalSponsorUniversity of California, San FranciscoRan2021 to 2031Enrolled26,436ConditionsTuberculosisArmsNovel mycobacterial culture techniques, Novel sputum smear microscopy techniques, Sputum-based molecular assays, Tongue swab-based molecular assays, Urine LAM assays
3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 3 countries.

Aaron WoodDepartment of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, United States of America.ORCID 0000-0002-0105-2502
Syed BarizuddinDepartment of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, United States of America.
Charles M DarrDepartment of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, United States of America.
Cherian J MathaiDepartment of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, United States of America.
Alexey BallIntellectual Ventures Laboratory, Bellevue, Washington, United States of America.
Kyle MinchIntellectual Ventures Laboratory, Bellevue, Washington, United States of America.
Akos SomoskoviIntellectual Ventures' Global Good Fund, Bellevue, Washington, United States of America.
Beston HamasurBiopromic AB, Solna, Sweden.ORCID 0000-0002-7565-9497
John T ConnellyIntellectual Ventures Laboratory, Bellevue, Washington, United States of America.
Bernhard WeiglIntellectual Ventures Laboratory, Bellevue, Washington, United States of America.
Alfred AndamaCollege of Health Sciences, Makerere University, Kampala, Uganda.
Adithya CattamanchiDivision of Pulmonary and Critical Care Medicine, University of California San Francisco.
Keshab GangopadhyayDepartment of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, United States of America.
Sangho BokDepartment of Engineering and Technology, Southern Utah University, Cedar City, Utah, United States of America.ORCID 0000-0003-1662-3125
Shubhra GangopadhyayDepartment of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, United States of America.
University of Missouri · USBellevue Hospital Center · USIntellectual Ventures (United States) · USKarolinska Institutet · SEMakerere University · UGSan Francisco General Hospital · USSouthern Utah University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTimely diagnosis of tuberculosis disease is critical for positive patient outcomes, yet potentially millions go undiagnosed or unreported each year. Sputum is widely used as the testing input, but limited by its complexity, heterogeneity, and sourcing problems. Finding methods to interrogate noninvasive, non-sputum clinical specimens is indispensable to improving access to tuberculosis diagnosis and care. In this work, economical plasmonic gratings were used to analyze tuberculosis biomarker lipoarabinomannan (LAM) from clinical urine samples by single molecule fluorescence assay (FLISA) and compared with gold standard sputum GeneXpert MTB/ RIF, culture, and reference ELISA testing results. METHODS AND

findingsIn this study, twenty sputum and urine sample sets were selected retrospectively from a repository of HIV-negative patient samples collected before initiation of anti-tuberculosis therapy. GeneXpert MTB/RIF and culture testing of patient sputum confirmed the presence or absence of pulmonary tuberculosis while all patient urines were reference ELISA LAM-negative. Plasmonic gratings produced by low-cost soft lithography were bound with anti-LAM capture antibody, incubated with patient urine samples, and biotinylated detection antibody. Fluorescently labeled streptavidin revealed single molecule emission by epifluorescence microscope. Using a 1 fg/mL baseline for limit of detection, single molecule FLISA demonstrated good qualitative agreement with gold standard tests on 19 of 20 patients, including accurately predicting the gold-standard-negative patients, while one gold-standard-positive patient produced no observable LAM in urine.

conclusionsSingle molecule FLISA by plasmonic grating demonstrated the ability to quantify tuberculosis LAM from complex urine samples of patients from a high endemic setting with negligible interference from the complex media itself. Moreover, agreement with patient diagnoses by gold standard testing suggests that single molecule FLISA could be used as a highly sensitive test to diagnose tuberculosis noninvasively.

Indexed as

Biosensing TechniquesHIV-1HIV SeronegativityAdultFemaleHumansLipopolysaccharidesMiddle AgedTuberculosislipoarabinomannanLipopolysaccharides

Identifiers

PMID30913250
PMCPMC6435140
OpenAlexW2923923096

What OpenQuestion holds

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LicenceCC BY
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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.