Evidence map›Paper›PMID 30911684›Full record

ArticleCommunications biology2019

Dynamic host immune response in virus-associated cancers.

Song Cao, Kristine M Wylie, Matt A Wyczalkowski, Alla Karpova, Jessica Ley, Sam Sun, R Jay Mashl, Wen-Wei Liang, Xiaowei Wang, Kimberly Johnson and 6 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 2 pooled it
2.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 2 syntheses or guidelines pooled it, 45 citations in OpenAlex.

  1. Pooled it
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  20. Oncogenic Viruses as Entropic Drivers of Cancer Evolution.Frontiers in virology (Lausanne, Switzerland) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 1 country.

Song Cao1Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110 USA.
Kristine M Wylie2McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108 USA.
Matt A Wyczalkowski1Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110 USA.
Alla Karpova1Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110 USA.
Jessica Ley4Siteman Cancer Center, Washington University in St. Louis, St. Louis, MO 63110 USA.
Sam Sun1Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110 USA.
R Jay Mashl1Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110 USA.
Wen-Wei Liang1Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110 USA.
Xiaowei Wang5Department of Radiation Oncology, Washington University in St. Louis, St. Louis, MO 63110 USA.
Kimberly Johnson7Brown School Master of Public Health Program, Washington University in St. Louis, St. Louis, MO 63130 USA.
John F DiPersio1Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110 USA.
Hiram Gay4Siteman Cancer Center, Washington University in St. Louis, St. Louis, MO 63110 USA.
Lee Ratner1Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110 USA.
Feng Chen1Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110 USA.
Douglas R Adkins1Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110 USA.
Li Ding1Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110 USA.
Washington University in St. Louis · USJames S. McDonnell Foundation · US

Funding

A Turnkey System for High-throughput Variant Discovery and InterpretationU01HG006517 · NHGRI · WASHINGTON UNIVERSITY · PI DING, LI · 2012 to 2015
$3.0M
MICRORNA BIOMARKERS FOR OROPHARYNGEAL CANCERR01DE026471 · NIDCR · WASHINGTON UNIVERSITY · PI WANG, XIAOWEI · 2017 to 2021
$2.2M
VIRUS DISCOVERY AND CHARACTERIZATION IN LARGE-SCALE CANCER SEQUENCING DATAR01CA178383 · NCI · WASHINGTON UNIVERSITY · PI DING, LI · 2014 to 2016
$772k
IMMUNE CHECKPOINT BLOCKADE PROMOTES ADULT T CELL LEUKEMIAR21CA234640 · NCI · WASHINGTON UNIVERSITY · PI RATNER, LEE · 2019 to 2020
$375k
NCI NIH HHS R01 CA178383NCI NIH HHS R21 CA234640NHGRI NIH HHS U01 HG006517NIDCR NIH HHS R01 DE026471
6 · The paper itself

Abstract

Viruses drive carcinogenesis in human cancers through diverse mechanisms that have not been fully elucidated but include promoting immune escape. Here we investigated associations between virus-positivity and immune pathway alteration for 2009 tumors across six virus-related cancer types. Analysis revealed that for 3 of 72 human papillomavirus (HPV)-positive head and neck squamous cell carcinoma (HNSC) the HPV genome integrated in immune checkpoint genes

Indexed as

Cell Transformation, ViralB7-H1 AntigenBiomarkers, TumorDisease SusceptibilityEpstein-Barr Virus InfectionsGene Expression ProfilingGene Expression Regulation, NeoplasticHost-Pathogen InteractionsHumansNeoplasmsPapillomavirus InfectionsProgrammed Cell Death 1 Ligand 2 ProteinVirus IntegrationB7-H1 AntigenBiomarkers, TumorCD274 protein, humanPDCD1LG2 protein, humanProgrammed Cell Death 1 Ligand 2 Protein

Identifiers

PMID30911684
PMCPMC6430765
OpenAlexW2925108289

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.