Evidence map›Paper›PMID 30911103›Full record

ArticleScientific reports2019

Genome-wide Analysis Reveals DNA Methylation Alterations in Obesity Associated with High Risk of Colorectal Cancer.

Lixin Dong, Li Ma, Gloria H Ma, Hongmei Ren

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

  1. Obesity-Associated Colorectal Cancer.International journal of molecular sciences · 2024
    Review
  2. Review
  3. Article
  4. Review
  5. Pulmonary fibroelastosis - A review.Matrix biology : journal of the International Society for Matrix Biology · 2023
    Review
  6. Article
  7. Review
  8. Hypermethylation ofAdvanced biomedical research · 2023
    Article
  9. Article
  10. Article
  11. Epigenetic regulation and targeting of ECM for cancer therapy.American journal of physiology. Cell physiology · 2022
    Review
  12. Ketotherapy as an epigenetic modifier in cancer.Reviews in endocrine & metabolic disorders · 2020
    Review
  13. Investigation ofAmerican journal of translational research · 2020
    Article
  14. NovelJournal of clinical medicine · 2019
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Lixin DongMumetel LLC, University Technology Park at IIT, Chicago, IL, USA.
Li MaMolecular Pathology, ACL Laboratories, Advocate Health Care, Rosemont, IL, USA.
Gloria H MaDepartment of Pathology, Advocate Sherman Hospital, Elgin, IL, USA.
Hongmei RenDepartment of Biochemistry & Molecular Biology, Wright State University, 3640 Colonel Glenn Hwy., Dayton, OH, USA. Hongmei.ren@wright.edu.ORCID http://orcid.org/0000-0003-0210-1502
Advocate Health Care · USSherman Hospital · USWright State University · US

Funding

The role of IKKß in linking obesity to adipose tissue inflammation and adipogeneP20GM103527 · NIGMS · UNIVERSITY OF KENTUCKY · PI MORRIS, ANDREW J · 2012 to 2017
$13.7M
Pilot Projects ProgramP30GM127211 · NIGMS · UNIVERSITY OF KENTUCKY · PI CASSIS, LISA A · 2018 to 2022
$5.7M
NIGMS NIH HHS P20 GM103527NIGMS NIH HHS P30 GM127211
6 · The paper itself

Abstract

Obesity is a high risk factor for colorectal cancer (CRC). The contribution of underlying epigenetic mechanisms to CRC and the precise targets of epigenetic alterations during cancer development are largely unknown. Several types of epigenetic processes have been described, including DNA methylation, histone modification, and microRNA expression. To investigate the relationship between obesity and CRC, we studied both obese and CRC patients, focusing on genome-wide peripheral blood DNA methylation alterations. Our results show abnormal distributions of overlapping differentially methylated regions (DMRs) such as hypermethylated CpG islands, which may account for epigenetic instability driving cancer initiation in obesity patients. Furthermore, functional analysis suggests that altered DNA methylation of extracellular (e.g., O-glycan processing) and intracellular components contribute to activation of oncogenes (e.g. KRAS and SCL2A1) and suppression of tumor suppressors (e.g. ARHGEF4, EPHB2 and SOCS3), leading to increased oncogenic potency. Our study demonstrates how DNA methylation changes in obesity contribute to CRC development, providing direct evidence of an association between obesity and CRC. It also reveals the diagnostic potential of using DNA methylation as an early risk evaluation to detect patients with high risk for CRC.

Indexed as

AdultAgedColorectal NeoplasmsCpG IslandsDNA MethylationEpigenesis, GeneticFemaleGene Expression Regulation, NeoplasticGenome-Wide Association StudyHumansMaleMiddle AgedMutationObesityPromoter Regions, GeneticReceptor, EphB2ARHGEF4 protein, humanEPHB2 protein, humanReceptor, EphB2Rho Guanine Nucleotide Exchange FactorsSOCS3 protein, humanSuppressor of Cytokine Signaling 3 Protein

Identifiers

PMID30911103
PMCPMC6433909
OpenAlexW2923140394

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.