Evidence map›Paper›PMID 30910956›Full record

Trial reportProceedings of the National Academy of Sciences of the United States of America2019

Risk variants disrupting enhancers of T

Peng Gao, Yasin Uzun, Bing He, Sarah E Salamati, Julie K M Coffey, Eva Tsalikian, Kai Tan

Open access · bronzeAbstract readClinical Trial
In one paragraph

Trial report in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 42 citations in OpenAlex.

  1. Trial
  2. Regulatory T cells in cancer and inflammation.Signal transduction and targeted therapy · 2026
    Review
  3. Observational
  4. Aberrant Enhancer Regulation, Phase Separation, and Autoimmune Diseases.Clinical reviews in allergy & immunology · 2025
    Review
  5. Review
  6. Article
  7. An autoimmune transcriptional circuit drives FOXP3Science translational medicine · 2024
    Article
  8. Review
  9. Article
  10. Review
  11. Genomic Analysis of Foxp3 Function in Regulatory T Cells.Journal of immunology (Baltimore, Md. : 1950) · 2023
    Review
  12. Review
  13. Changes of macrophage and CD4Scientific reports · 2022
    Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Peng GaoDivision of Oncology, Children's Hospital of Philadelphia, Philadelphia, PA 19104.
Yasin UzunDivision of Oncology, Children's Hospital of Philadelphia, Philadelphia, PA 19104.
Bing HeDivision of Oncology, Children's Hospital of Philadelphia, Philadelphia, PA 19104.
Sarah E SalamatiStead Family Department of Pediatrics, University of Iowa Carver College of Medicine, Iowa City, IA 52242.
Julie K M CoffeyStead Family Department of Pediatrics, University of Iowa Carver College of Medicine, Iowa City, IA 52242.
Eva TsalikianStead Family Department of Pediatrics, University of Iowa Carver College of Medicine, Iowa City, IA 52242.
Kai TanDivision of Oncology, Children's Hospital of Philadelphia, Philadelphia, PA 19104; tank1@email.chop.edu.
Children's Hospital of Philadelphia · USUniversity of Iowa · USUniversity of Pennsylvania · US

Funding

EPIGENETIC REGULATION OF STEM CELL FATE CHOICER01HG006130 · NHGRI · UNIVERSITY OF IOWA · PI TAN, KAI · 2012 to 2016
$1.7M
A SYSTEMS APPROACH TO THE GENETIC STUDY OF ALCOHOL DEPENDENCER01AA024486 · NIAAA · UNIVERSITY OF IOWA · PI HAN, SHIZHONG, TAN, KAI · 2017 to 2020
$1.6M
Computational Methods for Unraveling Combinatorial Gene RegulationR01GM108716 · NIGMS · UNIVERSITY OF IOWA · PI TAN, KAI · 2014 to 2017
$1.2M
A TOOLKIT FOR IDENTIFYING CAUSAL VARIANTS IN TRANSCRIPTIONAL ENHANCERSR01GM104369 · NIGMS · UNIVERSITY OF IOWA · PI TAN, KAI · 2014 to 2017
$1.2M
NHGRI NIH HHS R01 HG006130NIAAA NIH HHS R01 AA024486NIGMS NIH HHS R01 GM104369NIGMS NIH HHS R01 GM108716
6 · The paper itself

Abstract

Genome-wide association studies (GWASs) have revealed 59 genomic loci associated with type 1 diabetes (T1D). Functional interpretation of the SNPs located in the noncoding region of these loci remains challenging. We perform epigenomic profiling of two enhancer marks, H3K4me1 and H3K27ac, using primary T

Indexed as

Diabetes Mellitus, Type 1Enhancer Elements, GeneticPolymorphism, Single NucleotideRetinoic Acid Receptor alphaYY1 Transcription FactorChild, PreschoolEpigenomicsFemaleGenome-Wide Association StudyHumansInfantJurkat CellsMaleRisk FactorsTh1 CellsT-Lymphocytes, RegulatoryRARA protein, humanRetinoic Acid Receptor alphaYY1 protein, humanYY1 Transcription FactordiabetesenhancerepigenomicsGWASnoncoding variant

Identifiers

PMID30910956
PMCPMC6462079
OpenAlexW2922955753

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.