Evidence map›Paper›PMID 30910029›Full record

ArticleMethods in enzymology2019

Methodologies to monitor protein turnover at the inner nuclear membrane.

Pei-Ling Tsai, Chenguang Zhao, Christian Schlieker

Abstract read
In one paragraph

Article in Methods in enzymology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
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  6. Cell-type-specific, multicolor labeling of endogenous proteins with split fluorescent protein tags inProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Pei-Ling TsaiDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, United States.
Chenguang ZhaoDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, United States.
Christian SchliekerDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, United States; Department of Cell Biology, Yale School of Medicine, New Haven, CT, United States. Electronic address: christian.schlieker@yale.edu.
Yale University · US

Funding

Structure-function analysis of Torsin ATPases in the context of the membraneR01GM114401 · NIGMS · YALE UNIVERSITY · PI SCHLIEKER, CHRISTIAN DIRK · 2016 to 2019
$1.3M
Defining the nuclear envelope-resident protein turnover machinery implicated in diseases affecting cholesterol metabolismR01GM126835 · NIGMS · YALE UNIVERSITY · PI SCHLIEKER, CHRISTIAN DIRK · 2018 to 2021
$1.3M
NIGMS NIH HHS R01 GM114401NIGMS NIH HHS R01 GM126835
6 · The paper itself

Abstract

Lamin B receptor (LBR) is an inner nuclear membrane protein that associates with the nuclear lamina and harbors sterol reductase activity essential for cholesterol biosynthesis. Several LBR mutations implicated in human congenital disorders give rise to C-terminal truncations which render LBR metabolically unstable, resulting in their rapid turnover in the nucleus. These LBR variants serve as model substrates for investigating the poorly understood protein quality control pathways in the mammalian nuclear envelope (NE). Here we describe a split-GFP-based method for tagging these model substrates to enable live cell imaging and flow cytometry for the identification and characterization of NE-resident protein turnover machinery. Furthermore, we describe a facile subcellular fractionation method to isolate a soluble LBR degradation intermediate, allowing the deconvolution of the membrane extraction and proteasomal turnover steps. The combination of imaging-based and biochemical approaches described here facilitates detailed mechanistic studies to dissect protein turnover in the nuclear compartment.

Indexed as

AnimalsCell FractionationCell LineCell NucleusFlow CytometryFluorescent Antibody TechniqueGreen Fluorescent ProteinsHumansLamin B ReceptorNuclear EnvelopeOptical ImagingReceptors, Cytoplasmic and NuclearGreen Fluorescent ProteinsLamin B ReceptorReceptors, Cytoplasmic and NuclearERADInner nuclear membraneLamin B receptorNuclear laminaNucleusp97p97 inhibitorProteasomeUbiquitin

Identifiers

PMID30910029
PMCPMC6457266
OpenAlexW2914748156

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.