Evidence map›Paper›PMID 30910019›Full record

ArticleMethods in enzymology2019

Engineered disulfide crosslinking to measure conformational changes in the 26S proteasome.

Randi G Reed, Robert J Tomko

Open access · greenAbstract read
In one paragraph

Article in Methods in enzymology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Proteasomal conformation controls unfolding ability.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Randi G ReedDepartment of Biomedical Sciences, Florida State University College of Medicine, Tallahassee, FL, United States.
Robert J TomkoDepartment of Biomedical Sciences, Florida State University College of Medicine, Tallahassee, FL, United States. Electronic address: robert.tomko@med.fsu.edu.
Florida State University · US

Funding

Engagement and Communication Between Proteasonal SubcomplexesR01GM118600 · NIGMS · FLORIDA STATE UNIVERSITY · PI ROBERT JOSEPH TOMKO · 2017 to 2026
$2.7M
NIGMS NIH HHS R01 GM118600
6 · The paper itself

Abstract

The 26S proteasome is a multisubunit ATP-dependent peptidase complex mediating most regulated protein degradation in eukaryotes. The proteasome undergoes several coordinated conformational changes during catalysis that activate it for substrate processing and functionally couple distinct enzymatic activities during substrate degradation. Understanding the impact of substrate interactions and individual ATP binding events on these conformational changes is currently a major bottleneck in the study of proteasome function. Here, we describe a simple biochemical reporter based on engineered disulfide crosslinking for measuring the conformational distribution of the Saccharomyces cerevisiae 26S proteasome. We demonstrate its use to investigate the impact of ATP analogs and proteasome inhibitors on proteasome conformational equilibria. This reporter allows simultaneous and rapid comparison of multiple treatments or conditions on the steady-state conformational distribution of the proteasome and can be readily extended to the study of other multisubunit complexes for which multiple conformational states are known at near-atomic resolution.

Indexed as

Adenosine TriphosphateCross-Linking ReagentsDisulfidesModels, MolecularProteasome Endopeptidase ComplexProteasome InhibitorsProtein ConformationProtein SubunitsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAdenosine TriphosphateATP dependent 26S proteaseCross-Linking ReagentsDisulfidesProteasome Endopeptidase ComplexProteasome InhibitorsProtein SubunitsSaccharomyces cerevisiae Proteins26S proteasomeConformationConformational dynamicsDisulfide crosslinkingMultisubunit complexProteasome inhibitorsUbiquitin

Identifiers

PMID30910019
PMCPMC6987956
OpenAlexW2906924484

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.