ArticleProteomics2019
RAId: Knowledge-Integrated Proteomics Web Service with Accurate Statistical Significance Assignment.
Article in Proteomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
1 citing paper in PubMed.
- Robust Accurate Identification and Biomass Estimates of Microorganisms via Tandem Mass Spectrometry.Journal of the American Society for Mass Spectrometry · 2020Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
Abstract
Mass spectrometry-based proteomics starts with identifications of peptides and proteins, which provide the bases for forming the next-level hypotheses whose "validations" are often employed for forming even higher level hypotheses and so forth. Scientifically meaningful conclusions are thus attainable only if the number of falsely identified peptides/proteins is accurately controlled. For this reason, RAId continued to be developed in the past decade. RAId employs rigorous statistics for peptides/proteins identification, hence assigning accurate P-values/E-values that can be used confidently to control the number of falsely identified peptides and proteins. The RAId web service is a versatile tool built to identify peptides and proteins from tandem mass spectrometry data. Not only recognizing various spectra file formats, the web service also allows four peptide scoring functions and choice of three statistical methods for assigning P-values/E-values to identified peptides. Users may upload their own protein database or use one of the available knowledge integrated organismal databases that contain annotated information such as single amino acid polymorphisms, post-translational modifications, and their disease associations. The web service also provides a friendly interface to display, sort using different criteria, and download the identified peptides and proteins. RAId web service is freely available at https://www.ncbi.nlm.nih.gov/CBBresearch/Yu/raid.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.