Evidence map›Paper›PMID 30908506›Full record

ArticlePloS one2019

Reference set of Mycobacterium tuberculosis clinical strains: A tool for research and product development.

Sònia Borrell, Andrej Trauner, Daniela Brites, Leen Rigouts, Chloe Loiseau, Mireia Coscolla, Stefan Niemann, Bouke De Jong, Dorothy Yeboah-Manu, Midori Kato-Maeda and 4 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
6.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 92 citations in OpenAlex.

  1. Article
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  3. Microbiology (Reading, England) · 2026
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  5. bioRxiv : the preprint server for biology · 2026
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  8. Variability in intrinsic drug tolerance inAntimicrobial agents and chemotherapy · 2025
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  11. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 5 countries.

Sònia BorrellSwiss Tropical and Public Health Institute, Basel, Switzerland.ORCID 0000-0001-6661-6957
Andrej TraunerSwiss Tropical and Public Health Institute, Basel, Switzerland.
Daniela BritesSwiss Tropical and Public Health Institute, Basel, Switzerland.
Leen RigoutsMycobacteriology Unit, Department of Biomedical Sciences, Institute of Tropical Medicine, Antwerp, Belgium.
Chloe LoiseauSwiss Tropical and Public Health Institute, Basel, Switzerland.
Mireia CoscollaSwiss Tropical and Public Health Institute, Basel, Switzerland.
Stefan NiemannDivision of Molecular and Experimental Mycobacteriology Group, Research Center Borstel, Borstel, Germany.
Bouke De JongMycobacteriology Unit, Department of Biomedical Sciences, Institute of Tropical Medicine, Antwerp, Belgium.
Dorothy Yeboah-ManuNoguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana.
Midori Kato-MaedaSchool of Medicine, University of California at San Francisco, San Francisco, California, United States of America.
Julia FeldmannSwiss Tropical and Public Health Institute, Basel, Switzerland.
Miriam ReinhardSwiss Tropical and Public Health Institute, Basel, Switzerland.
Christian BeiselGenomics Facility, Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland.
Sebastien GagneuxSwiss Tropical and Public Health Institute, Basel, Switzerland.
Swiss Tropical and Public Health Institute · CHInstituut voor Tropische Geneeskunde · BEETH Zurich · CHResearch Center Borstel - Leibniz Lung Center · DEUniversity of California, San Francisco · USUniversity of Ghana · GH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Mycobacterium tuberculosis complex (MTBC) causes tuberculosis (TB) in humans and various other mammals. The human-adapted members of the MTBC comprise seven phylogenetic lineages that differ in their geographical distribution. There is growing evidence that this phylogeographic diversity modulates the outcome of TB infection and disease. For decades, TB research and development has focused on the two canonical MTBC laboratory strains H37Rv and Erdman, both of which belong to Lineage 4. Relying on only a few laboratory-adapted strains can be misleading as study results might not be directly transferrable to clinical settings where patients are infected with a diverse array of strains, including drug-resistant variants. Here, we argue for the need to expand TB research and development by incorporating the phylogenetic diversity of the MTBC. To facilitate such work, we have assembled a group of 20 genetically well-characterized clinical strains representing the seven known human-adapted MTBC lineages. With the "MTBC clinical strains reference set" we aim to provide a standardized resource for the TB community. We hope it will enable more direct comparisons between studies that explore the physiology of MTBC beyond the laboratory strains used thus far. We anticipate that detailed phenotypic analyses of this reference strain set will increase our understanding of TB biology and assist in the development of new control tools that are broadly effective.

Indexed as

Genetic VariationHumansMycobacterium tuberculosisPhylogenyPhylogeography

Identifiers

PMID30908506
PMCPMC6433267
OpenAlexW2949453164

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.