Evidence map›Paper›PMID 30905773›Full record

ArticleInfection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases2019

Isolation and identification of a variant subtype G 2b porcine epidemic diarrhea virus and S gene sequence characteristic.

Tongjia Zhu, Shuaishuai Du, Dongmei Cao, Zhihua Pei, Yanbing Guo, Hongze Shao, Haijun Wang, Kai Wang, Guixue Hu

Open access · greenAbstract read
In one paragraph

Article in Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Tongjia ZhuCollege of Animal Science and Technology, Jilin Agricultural University, Xincheng Street No. 2888, Changchun, PR China.
Shuaishuai DuCollege of Animal Science and Technology, Jilin Agricultural University, Xincheng Street No. 2888, Changchun, PR China.
Dongmei CaoCollege of Animal Science and Technology, Jilin Agricultural University, Xincheng Street No. 2888, Changchun, PR China.
Zhihua PeiCollege of Animal Science and Technology, Jilin Agricultural University, Xincheng Street No. 2888, Changchun, PR China.
Yanbing GuoAnimal Husbandry and Veterinary Science Research Institute of Jilin Province, Xian Street No. 4510, Changchun, PR China.
Hongze ShaoAnimal Husbandry and Veterinary Science Research Institute of Jilin Province, Xian Street No. 4510, Changchun, PR China.
Haijun WangWildlife Ambulance Breeding Center of Jilin Province, Changchun, Jilin, PR China.
Kai WangCollege of Animal Science and Technology, Jilin Agricultural University, Xincheng Street No. 2888, Changchun, PR China. Electronic address: wk197811@jlau.edu.cn.
Guixue HuCollege of Animal Science and Technology, Jilin Agricultural University, Xincheng Street No. 2888, Changchun, PR China. Electronic address: huguixue@jlau.edu.cn.
Jilin Agricultural University · CNAnimal Science Research Institute · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Porcine epidemic diarrhea (PED) which is caused by porcine epidemic diarrhea virus (PEDV), is an intestinal communicable disease. In recent years, though pigs have been immunized with the vaccines in pig farms, PED still broke out and caused severe economic losses to the swine industry in the northeast China. In this study, the sample was positive for PEDV variant strains via the nano-nest PCR. The strain was successfully isolated from positive samples and was serially passaged in Vero-E6 cells. In addition, the strain was identified via electron microscopy observation, indirect immunofluorescence assay and infection experiment in newborn piglets and named PEDV CH/JLDH/2016 strain (Accession No. MF346935). Phylogenetic analysis of the S gene showed that the CH/JLDH/2016 strain was clustered into G2b subgroup. Comparing with the CV777 vaccine strain, amino acid sequence analysis of CH/JLDH/2016 strain showed that 15 nucleotides were inserted and 9 were absent in S gene, whose amino acid sequence it educed insertions of 5 amino acids(

Indexed as

AnimalsChinaChlorocebus aethiopsCoronavirus InfectionsFarmsGenetic VariationGenome, ViralMolecular EpidemiologyPhylogenyPorcine epidemic diarrhea virusSwineSwine DiseasesVero CellsViral VaccinesViral VaccinesGenetic analysisIdentificationIsolationPorcine epidemic diarrhea virus (PEDV)

Identifiers

PMID30905773
PMCPMC7106306
OpenAlexW2925021049

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.