Evidence map›Paper›PMID 30905283›Full record

ArticlePhilosophical transactions of the Royal Society of London. Series B, Biological sciences2019

Variability in the durability of CRISPR-Cas immunity.

Hélène Chabas, Antoine Nicot, Sean Meaden, Edze R Westra, Denise M Tremblay, Léa Pradier, Sébastien Lion, Sylvain Moineau, Sylvain Gandon

Open access · bronzeAbstract read
In one paragraph

Article in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 32 citations in OpenAlex.

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  13. The ecology and evolution of microbial CRISPR-Cas adaptive immune systems.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Hélène Chabas1 CEFE UMR 5175, CNRS, Université de Montpellier, Université Paul-Valéry Montpellier, EPHE , 1919, Route de Mende, 34293 Montpellier Cedex 5, Paris , France.
Antoine Nicot1 CEFE UMR 5175, CNRS, Université de Montpellier, Université Paul-Valéry Montpellier, EPHE , 1919, Route de Mende, 34293 Montpellier Cedex 5, Paris , France.
Sean Meaden2 Environment and Sustainability Institute, University of Exeter , Penryn Campus, Penryn, Cornwall TR10 9FE , UK.
Edze R Westra2 Environment and Sustainability Institute, University of Exeter , Penryn Campus, Penryn, Cornwall TR10 9FE , UK.
Denise M Tremblay3 Département de Biochimie, Microbiologie et de Bio-Informatique, Faculté des Sciences et de Génie, Université Laval , 1045 Avenue de la Médecine, Québec City, Quebec , Canada G1V 0A6.
Léa Pradier1 CEFE UMR 5175, CNRS, Université de Montpellier, Université Paul-Valéry Montpellier, EPHE , 1919, Route de Mende, 34293 Montpellier Cedex 5, Paris , France.
Sébastien Lion1 CEFE UMR 5175, CNRS, Université de Montpellier, Université Paul-Valéry Montpellier, EPHE , 1919, Route de Mende, 34293 Montpellier Cedex 5, Paris , France.
Sylvain Moineau3 Département de Biochimie, Microbiologie et de Bio-Informatique, Faculté des Sciences et de Génie, Université Laval , 1045 Avenue de la Médecine, Québec City, Quebec , Canada G1V 0A6.
Sylvain Gandon1 CEFE UMR 5175, CNRS, Université de Montpellier, Université Paul-Valéry Montpellier, EPHE , 1919, Route de Mende, 34293 Montpellier Cedex 5, Paris , France.
Centre National de la Recherche Scientifique · FRUniversité Laval · CAUniversity of Exeter · GB

Funding

Biotechnology and Biological Sciences Research Council BB/N017412/1
6 · The paper itself

Abstract

The durability of host resistance is challenged by the ability of pathogens to escape the defence of their hosts. Understanding the variability in the durability of host resistance is of paramount importance for designing more effective control strategies against infectious diseases. Here, we study the durability of various clustered regularly interspaced short palindromic repeats-Cas (CRISPR-Cas) alleles of the bacteria Streptococcus thermophilus against lytic phages. We found substantial variability in durability among different resistant bacteria. Since the escape of the phage is driven by a mutation in the phage sequence targeted by CRISPR-Cas, we explored the fitness costs associated with these escape mutations. We found that, on average, escape mutations decrease the fitness of the phage. Yet, the magnitude of this fitness cost does not predict the durability of CRISPR-Cas immunity. We contend that this variability in the durability of resistance may be because of variations in phage mutation rate or in the proportion of lethal mutations across the phage genome. These results have important implications on the coevolutionary dynamics between bacteria and phages and for the optimal deployment of resistance strategies against pathogens and pests. Understanding the durability of CRISPR-Cas immunity may also help develop more effective gene-drive strategies based on CRISPR-Cas9 technology. This article is part of a discussion meeting issue 'The ecology and evolution of prokaryotic CRISPR-Cas adaptive immune systems'.

Indexed as

Adaptive ImmunityBacteriophagesCRISPR-Cas SystemsStreptococcus thermophilusclustered regularly interspaced short palindromic repeats-Casdurability of resistancemutation ratespathogen evolution

Identifiers

PMID30905283
PMCPMC6452261
OpenAlexW2925067026

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.