Evidence map›Paper›PMID 30904590›Full record

ArticleJournal of virological methods2019

A multiplex real-time PCR assay for the detection and differentiation of the newly emerged porcine circovirus type 3 and continuously evolving type 2 strains in the United States.

Yin Wang, Yuan Feng, Wanglong Zheng, Lance Noll, Elizabeth Porter, Megan Potter, Giselle Cino, Lalitha Peddireddi, Xuming Liu, Gary Anderson and 1 more

Abstract readValidation Study
In one paragraph

Article in Journal of virological methods, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Yin WangKansas State Veterinary Diagnostic Laboratory, Kansas State University, Manhattan, KS 66506, United States; Department of Diagnostic Medicine/Pathobiology, Kansas State University, Manhattan, KS 66506, United States.
Yuan FengKansas State Veterinary Diagnostic Laboratory, Kansas State University, Manhattan, KS 66506, United States.
Wanglong ZhengKansas State Veterinary Diagnostic Laboratory, Kansas State University, Manhattan, KS 66506, United States; College of Veterinary Medicine, Yangzhou University, Yangzhou, Jiangsu 225009, China.
Lance NollKansas State Veterinary Diagnostic Laboratory, Kansas State University, Manhattan, KS 66506, United States.
Elizabeth PorterKansas State Veterinary Diagnostic Laboratory, Kansas State University, Manhattan, KS 66506, United States.
Megan PotterAbilene Animal Hospital, Abilene, KS 67410, United States.
Giselle CinoKansas State Veterinary Diagnostic Laboratory, Kansas State University, Manhattan, KS 66506, United States; Department of Diagnostic Medicine/Pathobiology, Kansas State University, Manhattan, KS 66506, United States.
Lalitha PeddireddiKansas State Veterinary Diagnostic Laboratory, Kansas State University, Manhattan, KS 66506, United States; Department of Diagnostic Medicine/Pathobiology, Kansas State University, Manhattan, KS 66506, United States.
Xuming LiuKansas State Veterinary Diagnostic Laboratory, Kansas State University, Manhattan, KS 66506, United States; Department of Diagnostic Medicine/Pathobiology, Kansas State University, Manhattan, KS 66506, United States.
Gary AndersonDepartment of Diagnostic Medicine/Pathobiology, Kansas State University, Manhattan, KS 66506, United States.
Jianfa BaiKansas State Veterinary Diagnostic Laboratory, Kansas State University, Manhattan, KS 66506, United States; Department of Diagnostic Medicine/Pathobiology, Kansas State University, Manhattan, KS 66506, United States. Electronic address: jbai@vet.ksu.edu.
Kansas State University · USAbilene Christian University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A multiplex quantitative real-time polymerase chain reaction (mqPCR) assay was developed and validated for the detection and differentiation of porcine circovirus type 3 (PCV3) and type 2 (PCV2) strains. The assay coverage was 97.9% (184/188) for PCV3 and 99.1% (1889/1907) for PCV2 sequences that were available from the current GenBank database. The PCR amplification efficiencies were 98-99% for plasmids, and 92-96% for diagnostic samples, with correlation coefficients all greater than 0.99. The limit of detection (LOD) determined as plasmid copies per reaction was 17 for PCV3 and 14 for PCV2. The assay specifically detected the targeted viruses without cross reacting to each other or to other common porcine viruses. Among 336 swine clinical samples collected in 2018, 101 (30.1%) were PCV3 positive, 56 (16.7%) were PCV2 positive and 18 (5.4%) were co-positives. Sixty selected PCV3 positives were confirmed by Sanger sequencing, and 53 of the 56 PCV2 positive samples were tested positive by another validated PCR assay.

Indexed as

Evolution, MolecularAnimalsCircoviridae InfectionsCircovirusDNA, ViralGenome, ViralLimit of DetectionMultiplex Polymerase Chain ReactionSensitivity and SpecificitySequence Analysis, DNASwineSwine DiseasesUnited StatesDNA, ViralDiagnosisMultiplex PCRPCV2PCV3Porcine circovirusReal-time PCR

Identifiers

PMID30904590
PMCPMC7113677
OpenAlexW2923263822

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.