Evidence map›Paper›PMID 30903511›Full record

ArticleMolecular and cellular biochemistry2019

Biochemical, machine learning and molecular approaches for the differential diagnosis of Mucopolysaccharidoses.

Srilatha Kadali, Shaik Mohammad Naushad, Akella Radha Rama Devi, Vijaya Lakshmi Bodiga

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular and cellular biochemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Epidemiology of Mucopolysaccharidoses Update.Diagnostics (Basel, Switzerland) · 2021
    Review
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Srilatha KadaliDepartment of Biochemistry and Molecular Biology, Institute of Genetics & Hospital for Genetics Diseases, Osmania University, Begumpet, Hyderabad, Telangana, India.
Shaik Mohammad NaushadDepartment of Biochemical Genetics, Sandor Lifesciences Pvt. Ltd, Banjara Hills, Hyderabad, Telangana, India.
Akella Radha Rama DeviRainbow Children's Hospital, Banjara Hills, Hyderabad, Telangana, India.
Vijaya Lakshmi BodigaDepartment of Biochemistry and Molecular Biology, Institute of Genetics & Hospital for Genetics Diseases, Osmania University, Begumpet, Hyderabad, Telangana, India. bodigavijayasri@gmail.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study was aimed to construct classification and regression tree (CART) model of glycosaminoglycans (GAGs) for the differential diagnosis of Mucopolysaccharidoses (MPS). Two-dimensional electrophoresis and liquid chromatography-tandem mass spectrometry (LC-MS/MS) were used for the qualitative and quantitative analysis of GAGs. Specific enzyme assays and targeted gene sequencing were performed to confirm the diagnosis. Machine learning tools were used to develop CART model based on GAG profile. Qualitative and quantitative CART models showed 96.3% and 98.3% accuracy, respectively, in the differential diagnosis of MPS. The thresholds of different GAGs diagnostic of specific MPS types were established. In 60 MPS positive cases, 46 different mutations were identified in six specific genes. Among 31 different mutations identified in IDUA, nine were nonsense mutations and two were gross deletions while the remaining were missense mutations. In IDS gene, four missense, two frameshift, and one deletion were identified. In NAGLU gene, c.1693C > T and c.1914_1914insT were the most common mutations. Two ARSB, one case each of SGSH and GALNS mutations were observed. LC-MS/MS-based GAG pattern showed higher accuracy in the differential diagnosis of MPS. The mutation spectrum of MPS, specifically in IDUA and IDS genes, is highly heterogeneous among the cases studied.

Indexed as

Machine LearningAcetylglucosaminidaseAdolescentAdultChildChild, PreschoolChondroitinsulfatasesChromatography, LiquidDiagnosis, DifferentialFemaleGlycosaminoglycansHumansHydrolasesIduronidaseInfantMaleAcetylglucosaminidasealpha-N-acetyl-D-glucosaminidaseChondroitinsulfatasesGALNS protein, humanGlycosaminoglycansHydrolasesIDUA protein, humanIduronidaseN-sulfoglucosamine sulfohydrolaseCART modelGlycosaminoglycansLC–MS/MSMachine learning toolsMucopolysaccharidosesMutation analysis

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.