Evidence map›Paper›PMID 30903398›Full record

ArticleJournal of plant research2019

Comparative transcriptomic analysis reveal the regulation mechanism underlying MeJA-induced accumulation of alkaloids in Dendrobium officinale.

Yue Chen, Yunzhu Wang, Ping Lyu, Liping Chen, Chenjia Shen, Chongbo Sun

Abstract read
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In one paragraph

Article in Journal of plant research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
9.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 60 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. The accumulation of polysaccharides in Dendrobium officinale is closely related to rhizosphere bacteria.International microbiology : the official journal of the Spanish Society for Microbiology · 2025
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  5. Review
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  7. Article
  8. Metabolic Pathway Engineering Improves Dendrobine Production inInternational journal of molecular sciences · 2023
    Article
  9. Review
  10. Article
  11. Article
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  13. Article
  14. Light and Potassium Improve the Quality ofMolecules (Basel, Switzerland) · 2022
    Article
  15. Article
  16. Article
  17. Article
  18. Anti-colon Cancer Effects ofFrontiers in medicine · 2022
    Article
  19. Review
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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Yue ChenInstitute of Horticulture, Zhejiang Academy of Agriculture Science, Hangzhou, Zhejiang, People's Republic of China.
Yunzhu WangInstitute of Horticulture, Zhejiang Academy of Agriculture Science, Hangzhou, Zhejiang, People's Republic of China.
Ping LyuLin'an Agricultural and Forestry Technology Extension Center, Hangzhou, Zhejiang, People's Republic of China.
Liping ChenInstitute of Horticulture, Zhejiang Academy of Agriculture Science, Hangzhou, Zhejiang, People's Republic of China.
Chenjia ShenCollege of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, People's Republic of China.
Chongbo SunInstitute of Horticulture, Zhejiang Academy of Agriculture Science, Hangzhou, Zhejiang, People's Republic of China. chongpo1230@163.com.
Ministry of Agriculture and Rural Affairs · CNZheJiang Academy of Agricultural Sciences · CNHangzhou Normal University · CN

Funding

Natural Science Foundation of Zhejiang Province LQ17C150002Natural Science Foundation of Zhejiang Province, China LY19C160001Project of Excellent Scientist Fund in Zhejiang Academy of Agricultural Sciences 2016R05R08E03Tree Breeding Project of Zhejiang Province 2016C02065
6 · The paper itself

Abstract

Dendrobium officinale is a traditional medicinal herb with a variety of bioactive components. Alkaloid is one of the major active ingredients of Dendrobium plants, and its immune regulatory effects have been well-studied. Although a number of genes involved in the biosynthetic pathway of alkaloids have been elucidated, the regulation mechanism underlying the methyl-jasmonate (MeJA)-induced accumulation of alkaloids in D. officinale is largely unknown. In our study, a total of 4,857 DEGs, including 2,943 up- and 1,932 down-regulated genes, were identified between the control and MeJA-treated groups. Kyoto Encyclopedia of Genes and Genomes annotation showed that a number of DEGs were associated with the putative alkaloid biosynthetic pathway in D. officinale. The main group of Dendrobium alkaloids are sesquiterpene alkaloids, which are the downstream products of mevalonate (MVA) and methylerythritol 4-phosphate (MEP) pathway. Several MVA and MEP pathway genes were significantly up-regulated by the MeJA treatment, suggesting an active precursor supply for the alkaloid biosynthesis under MeJA treatment. A number of MeJA-induced P450 family genes, aminotransferase genes and methyltransferase genes were identified, providing several important candidates to further elucidate the sesquiterpene alkaloid biosynthetic pathway of D. officinale. Furthermore, a large number of MeJA-induced transcript factor encoding genes were identified, suggesting a complex genetic network affecting the sesquiterpene alkaloid metabolism in D. officinale. Our data aids to reveal the regulation mechanism underlying the MeJA-induced accumulation of sesquiterpene alkaloids in D. officinale.

Indexed as

AcetatesAlkaloidsCyclopentanesDendrobiumGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantMetabolic Networks and PathwaysOxylipinsPlant Growth RegulatorsReal-Time Polymerase Chain ReactionAcetatesAlkaloidsCyclopentanesmethyl jasmonateOxylipinsPlant Growth RegulatorsAlkaloidDendrobiumDifferential expressed genesMVA and MEP pathwaysP450 family

Identifiers

PMID30903398
OpenAlexW2923486541

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.