Evidence map›Paper›PMID 30903020›Full record

ArticleNature communications2019

Bromodomain and extraterminal proteins foster the core transcriptional regulatory programs and confer vulnerability in liposarcoma.

Ye Chen, Liang Xu, Anand Mayakonda, Mo-Li Huang, Deepika Kanojia, Tuan Zea Tan, Pushkar Dakle, Ruby Yu-Tong Lin, Xin-Yu Ke, Jonathan W Said and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 61 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Therapeutic Targeting of BET Proteins in Sarcoma.Molecular cancer therapeutics · 2025
    Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Epigenetic determinants of fusion-driven sarcomas: paradigms and challenges.Frontiers in cell and developmental biology · 2024
    Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 3 countries.

Ye ChenCancer Science Institute of Singapore, National University of Singapore, Singapore, 117599, Singapore.
Liang XuCancer Science Institute of Singapore, National University of Singapore, Singapore, 117599, Singapore. csixl@nus.edu.sg.ORCID http://orcid.org/0000-0002-2700-4840
Anand MayakondaCancer Science Institute of Singapore, National University of Singapore, Singapore, 117599, Singapore.
Mo-Li HuangCancer Science Institute of Singapore, National University of Singapore, Singapore, 117599, Singapore.
Deepika KanojiaCancer Science Institute of Singapore, National University of Singapore, Singapore, 117599, Singapore.
Tuan Zea TanCancer Science Institute of Singapore, National University of Singapore, Singapore, 117599, Singapore.ORCID http://orcid.org/0000-0001-6624-1593
Pushkar DakleCancer Science Institute of Singapore, National University of Singapore, Singapore, 117599, Singapore.
Ruby Yu-Tong LinCancer Science Institute of Singapore, National University of Singapore, Singapore, 117599, Singapore.
Xin-Yu KeCancer Science Institute of Singapore, National University of Singapore, Singapore, 117599, Singapore.
Jonathan W SaidDepartment of Pathology, UCLA Medical Center, University of California, Los Angeles, CA, 90095, USA.ORCID http://orcid.org/0000-0001-9474-2563
Jianxiang ChenHolistic Integrative Pharmacy Institutes, School of Medicine, Hangzhou Normal University, 311121, Hangzhou, China.
Sigal GeryDepartment of Medicine, Cedars-Sinai Medical Center, Los Angeles, CA, 90048, USA.
Ling-Wen DingCancer Science Institute of Singapore, National University of Singapore, Singapore, 117599, Singapore.
Yan-Yi JiangCancer Science Institute of Singapore, National University of Singapore, Singapore, 117599, Singapore.
Angela PangNational University Cancer Institute, National University Hospital, Singapore, 119074, Singapore.
Mark Edward PuhaindranNational University Cancer Institute, National University Hospital, Singapore, 119074, Singapore.
Boon Cher GohCancer Science Institute of Singapore, National University of Singapore, Singapore, 117599, Singapore.
H Phillip KoefflerCancer Science Institute of Singapore, National University of Singapore, Singapore, 117599, Singapore.ORCID http://orcid.org/0000-0001-5839-9913
National University of Singapore · SGCedars-Sinai Medical Center · USNational University Cancer Institute, Singapore · SGHangzhou Normal University · CNUniversity of California, Los Angeles · US

Funding

Connecting Genomic Alterations in Liposarcomas with Drug Responses and Identification of New Therapeutic ApproachesR01CA200992 · NCI · CEDARS-SINAI MEDICAL CENTER · PI KOEFFLER, HAROLD PHILLIP · 2016 to 2020
$1.8M
NCI NIH HHS R01 CA200992NIH HHS R01-CA200992-03
6 · The paper itself

Abstract

Liposarcomas (LPSs) are a group of malignant mesenchymal tumors showing adipocytic differentiation. Here, to gain insight into the enhancer dysregulation and transcriptional addiction in this disease, we chart super-enhancer structures in both LPS tissues and cell lines. We identify a bromodomain and extraterminal (BET) protein-cooperated FUS-DDIT3 function in myxoid LPS and a BET protein-dependent core transcriptional regulatory circuitry consisting of FOSL2, MYC, and RUNX1 in de-differentiated LPS. Additionally, SNAI2 is identified as a crucial downstream target that enforces both proliferative and metastatic potentials to de-differentiated LPS cells. Genetic depletion of BET genes, core transcriptional factors, or SNAI2 mitigates consistently LPS malignancy. We also reveal a compelling susceptibility of LPS cells to BET protein degrader ARV-825. BET protein depletion confers additional advantages to circumvent acquired resistance to Trabectedin, a chemotherapy drug for LPS. Moreover, this study provides a framework for discovering and targeting of core oncogenic transcriptional programs in human cancers.

Indexed as

Transcription, GeneticAnimalsAzepinesBase SequenceCarcinogenesisCell Line, TumorEnhancer Elements, GeneticGenome, HumanHumansLiposarcomaMice, Inbred NODMice, SCIDNeoplasm ProteinsOncogene Proteins, FusionThalidomideARV-825AzepinesFUS-DDIT3 fusion protein, humanNeoplasm ProteinsOncogene Proteins, FusionThalidomide

Identifiers

PMID30903020
PMCPMC6430783
OpenAlexW2923483441

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.