Evidence map›Paper›PMID 30902880›Full record

ArticleBioscience reports2019

Association between polymorphism in the promoter region of lncRNA GAS5 and the risk of colorectal cancer.

Yajie Wang, Shenshen Wu, Xi Yang, Xiaobo Li, Rui Chen

Erratum issuedAbstract read
In one paragraph

Article in Bioscience reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Prognostic Value ofBiomolecules · 2022
    Article
  14. Article
  15. Article
  16. Expression Profiles of Long Non-Coding RNADiagnostics (Basel, Switzerland) · 2021
    Article
  17. Article
  18. Article
  19. Article
  20. Genetic Variants ofBioMed research international · 2021
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Yajie WangKey Laboratory of Environmental Medicine Engineering, Ministry of Education School of Public Health, Southeast University, Nanjing 210009, China.
Shenshen WuKey Laboratory of Environmental Medicine Engineering, Ministry of Education School of Public Health, Southeast University, Nanjing 210009, China.
Xi YangKey Laboratory of Environmental Medicine Engineering, Ministry of Education School of Public Health, Southeast University, Nanjing 210009, China.
Xiaobo LiKey Laboratory of Environmental Medicine Engineering, Ministry of Education School of Public Health, Southeast University, Nanjing 210009, China.
Rui ChenKey Laboratory of Environmental Medicine Engineering, Ministry of Education School of Public Health, Southeast University, Nanjing 210009, China 101011816@seu.edu.cn.ORCID 0000-0002-7003-6602

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The growth arrest special 5 (GAS5), as a research hotspot of long noncoding RNAs (lncRNAs), has been reported to be associated with colorectal cancer (CRC). However, the association between polymorphisms in GAS5 and the risk of CRC was not clear. In the present study, a case-control study in 1078 CRC patients and 1175 matched healthy controls was performed to evaluate the association between the potential functional genetic variants in GAS5 and the risk of CRC. PCR-TaqMan, qPCR, dual-luciferase assay, electrophoretic mobility shift assay (EMSA), flow cytometry, migration and invasion assays were performed to evaluate the function of polymorphism. Results showed that subjects carrying the rs55829688 CT/TT genotypes had a significantly higher risk of CRC when compared with the CC genotype. Further qPCR assay confirmed that the CRC tissues with rs55829688 CT/TT genotypes had a higher GAS5 mRNA expression level. The dual-luciferase assay, qPCR and EMSA assay revealed that rs55829688 T>C polymorphism could decrease the expression level of GAS5 by impacting the binding ability of the transcription factor Yin Yang-1 (YY1) to the GAS5 promoter region. The expression of apoptosis-related proteins were detected by Western blot. Further, flow cytometry, migration, and invasion experiments showed that GAS5 repressed apoptosis and increased invasion and migration capability of CRC cells. Taken together, our findings provided evidence that the rs55829688 variant in the GAS5 promoter was associated with the risk of CRC and decreased expression of GAS5 by affecting the binding affinity of the transcription factors YY1 to GAS5.

Indexed as

Gene Expression Regulation, NeoplasticPolymorphism, Single NucleotideCase-Control StudiesCell Line, TumorCell ProliferationColorectal NeoplasmsHumansMiddle AgedNeoplasm InvasivenessPromoter Regions, GeneticRNA, Long NoncodingGAS5 long non-coding RNA, humanRNA, Long Noncodingcolorectal cancerGAS5large intervening non-coding RNAsingle nucleotide polymorphisms

Identifiers

PMID30902880
PMCPMC6465203

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.