Evidence map›Paper›PMID 30899425›Full record

ArticleOncotarget2019

Super-enhancers: novel target for pancreatic ductal adenocarcinoma.

Chandrayee Ghosh, Santanu Paul, Prasad Dandawate, Sumedha S Gunewardena, Dharmalingam Subramaniam, Cameron West, Shrikant Anant, Animesh Dhar

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Super-enhancer omics in stem cell.Molecular cancer · 2024
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Topical GZ21T Inhibits the Growth of Actinic Keratoses in a UVB-Induced Model of Skin Carcinogenesis.JID innovations : skin science from molecules to population health · 2023
    Article
  10. Review
  11. Review
  12. GZ17-6.02 Inhibits the Growth of EGFRvIII+ Glioblastoma.International journal of molecular sciences · 2022
    Article
  13. Article
  14. GZ17-6.02 kills prostate cancer cellsFrontiers in oncology · 2022
    Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Chandrayee GhoshDepartment of Cancer Biology, University of Kansas Medical Center, Kansas City, KS-66160, USA.
Santanu PaulDepartment of Cancer Biology, University of Kansas Medical Center, Kansas City, KS-66160, USA.
Prasad DandawateDepartment of Cancer Biology, University of Kansas Medical Center, Kansas City, KS-66160, USA.
Sumedha S GunewardenaDepartment of Molecular and Integrative Physiology, University of Kansas Medical Center, Kansas City, KS-66160, USA.
Dharmalingam SubramaniamDepartment of Cancer Biology, University of Kansas Medical Center, Kansas City, KS-66160, USA.
Cameron WestGenzada Pharmaceuticals, Sterling, KS-67579, USA.
Shrikant AnantDepartment of Cancer Biology, University of Kansas Medical Center, Kansas City, KS-66160, USA.
Animesh DharDepartment of Cancer Biology, University of Kansas Medical Center, Kansas City, KS-66160, USA.
The University of Kansas Cancer Center · USUniversity of Kansas Medical Center · USSterling Research Group · US

Funding

Using PCORnet to Expand the DS-CONNECT Cohort Through Healthcare System Recruitment, Incorporating Electronic Health Records, and Assessing Self-DeterminationU54HD090216 · NICHD · UNIVERSITY OF KANSAS LAWRENCE · PI BRADY, NANCY CAROLINE · 2016 to 2020
$6.2M
Bitter Melon Component and Colon Cancer PreventionR01CA190291 · NCI · UNIVERSITY OF KANSAS MEDICAL CENTER · PI ANANT, SHRIKANT, UMAR, SHAHID · 2014 to 2018
$2.7M
NCI NIH HHS R01 CA190291NICHD NIH HHS U54 HD090216
6 · The paper itself

Abstract

Super-enhancers (SEs) are unique areas of the genome which drive high-level of transcription and play a pivotal role in the cell physiology. Previous studies have established several important genes in cancer as SE-driven oncogenes. It is likely that oncogenes may hack the resident tissue regenerative program and interfere with SE-driven repair networks, leading to the specific pancreatic ductal adenocarcinoma (PDAC) phenotype. Here, we used ChIP-Seq to identify the presence of SE in PDAC cell lines. Differential H3K27AC marks were identified at enhancer regions of genes including c-MYC, MED1, OCT-4, NANOG, and SOX2 that can act as SE in non-cancerous, cancerous and metastatic PDAC cell lines. GZ17-6.02 affects acetylation of the genes, reduces transcription of major transcription factors, sonic hedgehog pathway proteins, and stem cell markers. In accordance with the decrease in Oct-4 expression, ChIP-Seq revealed a significant decrease in the occupancy of OCT-4 in the entire genome after GZ17-6.02 treatment suggesting the possible inhibitory effect of GZ17-6.02 on PDAC. Hence, SE genes are associated with PDAC and targeting their regulation with GZ17-6.02 offers a novel approach for treatment.

Indexed as

cancer stem cellsChIP-SeqPDACsuper-enhancerstherapeutics

Identifiers

PMID30899425
PMCPMC6422180
OpenAlexW2917935999

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.