Evidence map›Paper›PMID 30899075›Full record

ArticleThe ISME journal2019

Domestication of previously uncultivated Candidatus Desulforudis audaxviator from a deep aquifer in Siberia sheds light on its physiology and evolution.

Olga V Karnachuk, Yulia A Frank, Anastasia P Lukina, Vitaly V Kadnikov, Alexey V Beletsky, Andrey V Mardanov, Nikolai V Ravin

Abstract read
In one paragraph

Article in The ISME journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Species-resolved, single-cell respiration rates reveal dominance of sulfate reduction in a deep continental subsurface ecosystem.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. Novel thermophilic generaFrontiers in microbiology · 2024
    Article
  14. Article
  15. Article
  16. Antibiotic-ResistantMicroorganisms · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Olga V KarnachukLaboratory of Biochemistry and Molecular Biology, Tomsk State University, Tomsk, 634050, Russia. olga.karnachuk@green.tsu.ru.
Yulia A FrankLaboratory of Biochemistry and Molecular Biology, Tomsk State University, Tomsk, 634050, Russia.
Anastasia P LukinaLaboratory of Biochemistry and Molecular Biology, Tomsk State University, Tomsk, 634050, Russia.
Vitaly V KadnikovInstitute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, 119071, Russia.
Alexey V BeletskyInstitute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, 119071, Russia.
Andrey V MardanovInstitute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, 119071, Russia.ORCID http://orcid.org/0000-0002-8245-8757
Nikolai V RavinInstitute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, 119071, Russia. nravin@biengi.ac.ru.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An enigmatic uncultured member of Firmicutes, Candidatus Desulforudis audaxviator (CDA), is known by its genome retrieved from the deep gold mine in South Africa, where it formed a single-species ecosystem fuelled by hydrogen from water radiolysis. It was believed that in situ conditions CDA relied on scarce energy supply and did not divide for hundreds to thousand years. We have isolated CDA strain BYF from a 2-km-deep aquifer in Western Siberia and obtained a laboratory culture growing with a doubling time of 28.5 h. BYF uses not only H

Indexed as

EcosystemEvolution, MolecularGenomicsGroundwaterIronPeptococcaceaePhylogenySiberiaSouth AfricaSulfatesIronSulfates

Identifiers

PMID30899075
PMCPMC6776058

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.