Evidence map›Paper›PMID 30898106›Full record

ArticleBMC genomics2019

Relative effects of location relative to the corpus luteum and lactation on the transcriptome of the bovine oviduct epithelium.

Yann Locatelli, Niamh Forde, Helmut Blum, Alexander Graf, Benoît Piégu, Pascal Mermillod, Eckhard Wolf, Patrick Lonergan, Marie Saint-Dizier

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
5.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 4 countries.

Yann LocatelliUMR85 PRC, INRA, CNRS 7247, Université de Tours, IFCE, Nouzilly, France.
Niamh FordeDivision of Reproduction and Early Development, Faculty of Medicine and Health Sciences, University of Leeds, Nouzilly, UK.
Helmut BlumLaboratory for Functional Genome Analysis (LAFUGA), Gene Center, LMU Munich, Leeds, Germany.
Alexander GrafLaboratory for Functional Genome Analysis (LAFUGA), Gene Center, LMU Munich, Leeds, Germany.
Benoît PiéguUMR85 PRC, INRA, CNRS 7247, Université de Tours, IFCE, Nouzilly, France.
Pascal MermillodUMR85 PRC, INRA, CNRS 7247, Université de Tours, IFCE, Nouzilly, France.
Eckhard WolfLaboratory for Functional Genome Analysis (LAFUGA), Gene Center, LMU Munich, Leeds, Germany.
Patrick LonerganSchool of Agriculture and Food Science, University College Dublin, Dublin, Ireland.
Marie Saint-DizierUMR85 PRC, INRA, CNRS 7247, Université de Tours, IFCE, Nouzilly, France. marie.saint-dizier@univ-tours.fr.
Ludwig-Maximilians-Universität München · DEUniversité de Tours · FRCentre National de la Recherche Scientifique · FRPhysiologie de la Reproduction et des Comportements · FRUniversity College Dublin · IEUniversity of Leeds · GB

Funding

FP7 Food, Agriculture and Fisheries, Biotechnology 312097
6 · The paper itself

Abstract

backgroundLactation and associated metabolic stresses during the post-partum period have been shown to impair fertility in dairy cows. The oviduct plays key roles in embryo development and the establishment of pregnancy in cattle. The aim of this study was to investigate the effects of lactation and location relative to the corpus luteum (CL) on the transcriptome of the bovine oviduct epithelium.

resultsAn original animal model was used. At 60 days post-partum, Holstein lactating (n = 4) and non-lactating (i.e. never milked after calving; n = 5) cows, as well as control nulliparous heifers (n = 5), were slaughtered on Day 3 following induced estrus, and epithelial samples from the oviductal ampulla and isthmus ipsilateral and contralateral to the corpus luteum (CL) were recovered for RNA sequencing. In the oviduct ipsilateral to the CL, differentially expressed genes (DEGs) were identified between heifers compared with both postpartum cow groups. However, only 15 DEGs were identified between post-partum lactating and non-lactating cows in the ipsilateral isthmus and none were identified in the ipsilateral ampulla. In contrast, 192 and 2583 DEGs were identified between ipsilateral and contralateral ampulla and isthmus, respectively. In both regions, more DEGs were identified between ipsilateral and contralateral oviducts in non-lactating cows and heifers than in lactating cows. Functional annotation of the DEGs associated with comparisons between metabolic groups highlighted a number of over-represented biological functions and cell pathways including immune response and cholesterol/steroid biosynthesis.

conclusionsGene expression in the oviduct epithelium, particularly in the isthmus, was more affected by the location relative to the CL than by lactation at Day 3 post-estrus. Furthermore, the effect of the proximity to the CL was modulated by the metabolic status of the cow.

Indexed as

Corpus LuteumGene Expression ProfilingLactationOviductsAnimalsCattleFemaleTissue SurvivalDairy cowLactationMetabolismOviductRNAseq

Identifiers

PMID30898106
PMCPMC6427878
OpenAlexW2922565444

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.