Evidence map›Paper›PMID 30898080›Full record

ArticleEmerging microbes & infections2019

Genomic epidemiology of erythromycin-resistant Bordetella pertussis in China.

Zheng Xu, Zengguo Wang, Yang Luan, Yarong Li, Xiaoguai Liu, Xiaokang Peng, Sophie Octavia, Michael Payne, Ruiting Lan

Open access · goldAbstract read
In one paragraph

Article in Emerging microbes & infections, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 1 pooled it
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 1 synthesis or guideline pooled it, 70 citations in OpenAlex.

  1. Antimicrobial resistance inEpidemiology and infection · 2026
    Pooled it
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  8. Waning immunity, prevailing non-vaccine typeThe Lancet regional health. Western Pacific · 2025
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  9. Vaccine antigen-based genotyping ofMicrobiology spectrum · 2025
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  12. Review
  13. Frontiers in cellular and infection microbiology · 2025
    Article
  14. DecipheringJournal of clinical microbiology · 2024
    Article
  15. Article
  16. StrengtheningJournal of clinical microbiology · 2024
    Article
  17. Article
  18. Article
  19. Genomic epidemiology and multilevel genome typing ofEmerging microbes & infections · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Zheng Xua School of Biotechnology and Biomolecular Sciences , University of New South Wales , Sydney , Australia.
Zengguo Wangb Xi'an Center for Disease Prevention and Control , Xi'an , People's Republic of China.
Yang Luanb Xi'an Center for Disease Prevention and Control , Xi'an , People's Republic of China.
Yarong Lic Department of Infectious Diseases , Xi'an Children's Hospital , Xi'an , People's Republic of China.
Xiaoguai Liuc Department of Infectious Diseases , Xi'an Children's Hospital , Xi'an , People's Republic of China.
Xiaokang Pengc Department of Infectious Diseases , Xi'an Children's Hospital , Xi'an , People's Republic of China.
Sophie Octaviaa School of Biotechnology and Biomolecular Sciences , University of New South Wales , Sydney , Australia.
Michael Paynea School of Biotechnology and Biomolecular Sciences , University of New South Wales , Sydney , Australia.
Ruiting Lana School of Biotechnology and Biomolecular Sciences , University of New South Wales , Sydney , Australia.
UNSW Sydney · AUXi’an Children’s Hospital · CNXian Center for Disease Control and Prevention · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Macrolides such as erythromycin are the empirical treatment of Bordetella pertussis infections. China has experienced an increase in erythromycin-resistant B. pertussis isolates since they were first reported in 2013. Here, we undertook a genomic study on Chinese B. pertussis isolates from 2012 to 2015 to elucidate the origins and phylogenetic relationships of erythromycin-resistant B. pertussis isolates in China. A total of 167 Chinese B. pertussis isolates were used for antibiotic sensitivity testing and multiple locus variable-number tandem repeat (VNTR) analysis (MLVA). All except four isolates were erythromycin-resistant and of the four erythromycin-sensitive isolates, three were non-ptxP1. MLVA types (MT), MT55, MT104 and MT195 were the predominant types. Fifty of those isolates were used for whole genome sequencing and phylogenetic analysis. Genome sequencing and phylogenetic analysis revealed three independent erythromycin-resistant lineages and all resistant isolates carried a mutation in the 23S rRNA gene. A novel fhaB3 allele was found uniquely in Chinese ptxP1 isolates and these Chinese ptxP1-ptxA1-fhaB3 had a 5-fold higher mutation rate than the global ptxP1-ptxA1 B. pertussis population. Our results suggest that the evolution of Chinese B. pertussis is likely to be driven by selection pressure from both vaccination and antibiotics. The emergence of the new non-vaccine fhaB3 allele in Chinese B. pertussis population may be a result of selection from vaccination, whereas the expansion of ptxP1-fhaB3 lineages was most likely to be the result of selection pressure from antibiotics. Further monitoring of B. pertussis in China is required to better understand the evolution of the pathogen.

Indexed as

Drug Resistance, BacterialGenetic VariationAnti-Bacterial AgentsBordetella pertussisChinaCluster AnalysisDNA, BacterialDNA, RibosomalDrug UtilizationErythromycinGenotypeHumansMicrobial Sensitivity TestsMinisatellite RepeatsMolecular EpidemiologyMolecular TypingAnti-Bacterial AgentsDNA, BacterialDNA, RibosomalErythromycinPertussis VaccineRNA, Ribosomal, 23Serythromycin-resistantgenomic epidemiology

Identifiers

PMID30898080
PMCPMC6455148
OpenAlexW2925222194

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.