Evidence map›Paper›PMID 30897084›Full record

ArticlePloS one2019

Placental epigenetics for evaluation of fetal congenital heart defects: Ventricular Septal Defect (VSD).

Uppala Radhakrishna, Samet Albayrak, Rita Zafra, Alosh Baraa, Sangeetha Vishweswaraiah, Avinash M Veerappa, Deepthi Mahishi, Nazia Saiyed, Nitish K Mishra, Chittibabu Guda and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 2 pooled it
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 2 syntheses or guidelines pooled it, 53 citations in OpenAlex.

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  16. The Role of Placental Non-Coding RNAs in Adverse Pregnancy Outcomes.International journal of molecular sciences · 2023
    Review
  17. Article
  18. Article
  19. Epigenetics in Congenital Heart Disease.Journal of the American Heart Association · 2022
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 2 countries.

Uppala RadhakrishnaDepartment of Obstetrics and Gynecology, Oakland University William Beaumont School of Medicine, Royal Oak, Michigan, United States of America.ORCID 0000-0002-6617-5634
Samet AlbayrakDepartment of Obstetrics and Gynaecology, Wayne State University School of Medicine, Detroit, Michigan, United States of America.
Rita ZafraDepartment of Obstetrics and Gynaecology, Icahn School of Medicine at Mount Sinai, New York, New York, United States of America.
Alosh BaraaDepartment of Pathology, Wayne State University School of Medicine, Detroit, Michigan, United States of America.
Sangeetha VishweswaraiahDepartment of Obstetrics and Gynecology, Oakland University William Beaumont School of Medicine, Royal Oak, Michigan, United States of America.
Avinash M VeerappaDepartment of Studies in Genetics and Genomics, Laboratory of Genomic Sciences, University of Mysore, Mysore, India.
Deepthi MahishiDepartment of Studies in Genetics and Genomics, Laboratory of Genomic Sciences, University of Mysore, Mysore, India.
Nazia SaiyedBiotechnology, Nirma Institute of Science, Nirma University, Ahmedabad, India.
Nitish K MishraDepartment of Genetics, Cell Biology & Anatomy, College of Medicine, University of Nebraska Medical Centre Omaha, Nebraska, United States of America.
Chittibabu GudaDepartment of Genetics, Cell Biology & Anatomy, College of Medicine, University of Nebraska Medical Centre Omaha, Nebraska, United States of America.
Rouba Ali-FehmiDepartment of Pathology, Wayne State University School of Medicine, Detroit, Michigan, United States of America.
Ray O Bahado-SinghDepartment of Obstetrics and Gynecology, Oakland University William Beaumont School of Medicine, Royal Oak, Michigan, United States of America.
Oakland University · USWayne State University · USUniversity of Mysore · INUniversity of Nebraska Medical Center · USIcahn School of Medicine at Mount Sinai · USNirma University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ventricular Septal Defect (VSD), the most common congenital heart defect, is characterized by a hole in the septum between the right and left ventricles. The pathogenesis of VSD is unknown in most clinical cases. There is a paucity of data relevant to epigenetic changes in VSD. The placenta is a fetal tissue crucial in cardiac development and a potentially useful surrogate for evaluating the development of heart tissue. To understand epigenetic mechanisms that may play a role in the development of VSD, genome-wide DNA methylation assay on placentas of 8 term subjects with isolated VSD and no known or suspected genetic syndromes and 10 unaffected controls was performed using the Illumina HumanMethylation450 BeadChip assay. We identified a total of 80 highly accurate potential CpGs in 80 genes for detection of VSD; area under the receiver operating characteristic curve (AUC ROC) 1.0 with significant 95% CI (FDR) p-values < 0.05 for each individual locus. The biological processes and functions for many of these differentially methylated genes are previously known to be associated with heart development or disease, including cardiac ventricle development (HEY2, ISL1), heart looping (SRF), cardiac muscle cell differentiation (ACTC1, HEY2), cardiac septum development (ISL1), heart morphogenesis (SRF, HEY2, ISL1, HEYL), Notch signaling pathway (HEY2, HEYL), cardiac chamber development (ISL1), and cardiac muscle tissue development (ACTC1, ISL1). In addition, we identified 8 microRNAs that have the potential to be biomarkers for the detection of VSD including: miR-191, miR-548F1, miR-148A, miR-423, miR-92B, miR-611, miR-2110, and miR-548H4. To our knowledge this is the first report in which placental analysis has been used for determining the pathogenesis of and predicting VSD.

Indexed as

Epigenesis, GeneticCase-Control StudiesCpG IslandsDNA MethylationFemaleFetal HeartGenetic MarkersHeart Septal Defects, VentricularHumansInfant, NewbornMaleMicroRNAsPlacentaPregnancyGenetic MarkersMicroRNAs

Identifiers

PMID30897084
PMCPMC6428297
OpenAlexW2952786818

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.